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upupa-epops common dandelion (Taraxacum officinale)

T. officinale is no longer accepted by POWO: http://powo.science.kew.org/taxon/urn:lsid:ipni.org:names:1003018-2

Jun. 8, 2021 23:13:28 +0000 Not Resolved

Comments

For me we could accept POWO treatment

Posted by blue_celery almost 3 years ago

@danielatha @srall @susanhewitt @bouteloua @loarie @crbjork @snedergaard
for your information

Following POWO would be to merge this species with section Taraxacum.

Posted by upupa-epops almost 3 years ago

I use T. officinale in sensu lato; makes sense to just merge with the section.

Posted by srall almost 3 years ago

Following POWO is the right step. Merging with section Taraxacum will clarify a lot. I support it.

Posted by snedergaard almost 3 years ago

@srall @susanhewitt @bouteloua @loarie @crbjork @snedergaard, @blue_celery, @sambiology, @davidenrique

It must be remembered that any taxonomic presentation is a hypothesis, subject to testing, validation and of course later revision as more evidence is introduced and analyzed. One thing botanists have been very good at is preserving evidence (type specimens and literature) which facilitates re-evaluation of hypothesis. Botanists have also generally been open-minded and flexible, allowing for differing conclusions based on the evidence. As a result, options are available to users who interpret the same data differently. Whether Taraxacum officinale qualifies as a species or not will always be a matter of opinion and will probably always be debated among specialists and non-specialists alike. The system as it exists now does not preclude anyone from applying a sectional name to any observation if they so chose. But merging the name into section Taraxacum or another section (and eliminating it) will preclude everyone from being able to apply a species concept to the weedy, apomictic, triploids that occurs across the world. This is contrary to the long tradition of flexibility in taxonomy. And once that name is eliminated, a tremendous of amount of information will be lost, hindering later re-evaluation. As it is now, it is relatively simple to construct any scheme one chooses based on the available data. But once the specific name is eliminated, only one scheme will be possible to apply from the available data.

Affecting either change proposed here will have tremendous disruption. There are currently over 83,000 observations carrying the name Taraxacum officinale Because there is so much debate and ambiguity around what is a species and how to apply the concept to Taraxacum officinale, I think it is unwise to force the entire world into one conclusion and permanently eliminate the possibility for alternative interpretations. A consumer of science (all iNat users included) will rightly question why scientific principles are being applied arbitrarily and unevenly.

An example of this is Persicaria coccinea which has variously been considered a species, subspecies, variety or plain synonym of Persicaria amphibia. I have been studying these plants for over a decade and have been accumulating data to inform a rational and scientifically sound hypothesis about these plants. Several years ago, someone committed a taxon merge to lump the name Persicaria coccinea into Persicaria amphibia because that is what Flora of North America did. Luckily, there exists a varietal name (preserved in iNat and elsewhere) that has enabled the identification of both entities distinctly. I had examined most of the thousand or so herbarium specimens held in major North American herbaria, but had not come to a point of formulating a firm hypothesis. With the availability of over 2,000 iNaturalist observations, most with good (often high-resolution) diagnostic photos and precise georeferencing and notes, it was possible to discern patterns that were obscure before and add a whole new line of evidence (geography and ecology) to bear on the problem. See the journal post here. If the names Persicaria coccinea and Persicaria amphibia var. emersa had been deleted and merged into Persicaria amphibia, none of this new analysis would have been possible. After the person saw the new evidence, they wrote to me and apologized for committing those name changes and offered to reverse them. I responded that to do so would cause yet more disruption prematurely. It was still possible to distinguish both entities with a name to facilitate further analysis and so a change at that time was not absolutely necessary. I said the change should be committed when a solid body of evidence had accumulated and been peer-reviewed. I am honest enough to admit that I have biases and opinions, but I am a scientist and I will not impose those on others. At some point I will present a hypothesis which the world will be free to review, test and interpret as they see fit (The journal post above is a draft). But at no time will I preclude others from accessing and using the data as I did or repeating my methods. I also know that additional evidence will come to light (such as molecular genetics) and it must be possible to integrate that data into the body of existing data in the most flexible and rigorous way.

In the interest of scientific integrity, I oppose both changes. The name Taraxacum officinale must be preserved and available for use.

Posted by danielatha almost 3 years ago

I agree with Daniel. In my opinion, iNat should be a very pragmatic platform that provides data that facilitates research and allows users (even non-scientists) to explore and engage with the natural world. I think this merge would hinder both those goals. Losing information/data is pretty much ALWAYS a bad thing in science, so we should be extremely wary of doing taxon merges unless there are very clear and compelling reasons to do so. Conversely, we should be very willing to err on the side of making taxon splits. There's just an inherent asymmetry there that makes merges much more problematic.
Anyone who doesn't like the T. officinale species concept can simply just look at the data of the section or of the genus, so I really see zero drawbacks (in terms of being able to use the data) to having a T. officinale taxon. As for engagement and accessibility for the public, well, do I really need to spell out how annoying, confusing, and off-putting is to have constant name changes? particularly when the changes are to these mysterious things they never teach you about in high school biology called "sections" or "complexes" or whatnot? And then there's the issue of using the site as an identifier.... which I won't even go into.

So in short, it's all about costs and benefits. I see very little benefits to the merge (other than being "correct" according so some), but lots of costs.

Posted by davidenrique almost 3 years ago

Is any information lost by committing this merge? As far as I know T. officinale is considered roughly equivalent to section Taraxacum by both "sides". The disagreement is mainly just what label to use. If you prefer the macrospecies label, you don't recognize any other species in the section so having the section is redundant. Using POWO's taxonomy, identifying to section is exactly as informative. The name "Taraxacum officinale" will remain in the iNat system as a synonym and thus still usable in a way.

If I understand the situations correctly, the Persicaria situation is looking at a clade with two lower clades and asking whether the species designation should apply at the first or second level. If it was used at the first level and no sub-specific labels were applied to the two lower clades, valuable information would be harder to collect. I'm not sure that this situation is analogous.

Posted by upupa-epops almost 3 years ago

Yikes! Yes, I have indeed learned a lot from my past "follow POWO and no other" previous curatorial duties!

One of the things that I'm finding most valuable these days, especially with discrepancies in taxonomy (some differences in Flora of North America and POWO, with North American plants) is to tag on the experts, or at least, the folks have have been observing the most or ID'ing the most -- to increase that dialogue. In the past, I would just do the POWO treatment and be done with it (without getting proper discussion and conversation) -- that's an erroneous way to deal with taxonomy on iNat, in my new opinion!

So, here are some of the folks that have been rockstars on Taraxacum ID's that may want to chime in on this. With a lot of bias, I'm hopeful that T. officinale stays, but I'm open to whatever decision is made.

@tsn @nathantaylor @silversea_starsong @zoefoster @sadawolk @gcwarbler @bouteloua

Also, Nathan's got a really interesting journal entry that discusses some of the Taraxacum in TX that I've found quite helpful (again, using T. officinale as a distinct species) -- highly suggest checking it out:
https://www.inaturalist.org/journal/nathantaylor/14848-texas-species-of-dandelion-as-near-as-i-can-tell

Posted by sambiology almost 3 years ago

Information is lost if an observation can only be identified as either T. officinale or a microspecies of section Taraxacum.

Let's say we can all agree that an observation can be identified as T. officinale sensu lato (there is no such thing as T. officinale sensu stricto by the way), or T. officinale agg. Let's say we could also agree that the observation keys to the microspecies T. ekmanii.

Currently there is no mechanism in iNat's taxonomy for both identifications to apply at the same time; since both "species" are currently set as if they are different clades within section Taraxacum. I don't think anyone thinks that is how it should be?

Posted by upupa-epops almost 3 years ago

Glad to hear your thought's Sam. I will read Nathan's post.

One of the (many!) things I love about iNaturalist is that it continues the time-honored tradition of specimen annotation, preserving what someone thought something was (justified or not). These annotations are what will enable future generations to review previous hypotheses and duplicate exactly what was done before to test that hypothesis. The annotations can accumulate, swing back and forth without value judgement. They unequivocally add to the "debate" without hindering any other interpretation or future research.

Posted by danielatha almost 3 years ago

we should be extremely wary of doing taxon merges unless there are very clear and compelling reasons to do so. Conversely, we should be very willing to err on the side of making taxon splits. There's just an inherent asymmetry there that makes merges much more problematic.

@davidenrique because of the strange situation going on here, that's not really what's happening. The actual curatorial action being taken is a single merge, but it wouldn't be entirely inaccurate to describe the general taxonomic change happening here to be splitting the species into several hundred species. "Common Dandelion" changing to "Common Dandelions". The weird situation is that all those other species already exist in the system and are competing with the one species.

Posted by upupa-epops almost 3 years ago

I consider this consistency with POWO irrelevant because as it is, we are already using optimistic headings on iNaturalist in lieu of them being indistinguishable, confusing, and contentious. Both T. officinale and erythrospermum are, in the most specialized sense, incorrectly used on iNaturalist. They are used here as complex-level headings to ambiguously refer to Taraxacum under two broad categories of "red-seeded" or "not red-seeded".

The first mistake was not changing these "species" headings to "complex" headings, e.g. as Rubus fruticosus. The issue is, if we adopted fully formal taxonomy, it would mean sticking 100% to the microspecies sections and classification. This does nail the coffin for Taraxacum observations because it is incredibly difficult even for expert botanists to use the full Taraxacum microspecies taxonomy, due to the variability and complexity of the identification. See the iNaturalist maps for officiale and erythrospermum, and you have a dataset there. Something that's actually useful to hang on to.

That also brings up an issue which is that, even though taxon disagreements aren't new, this is a bit of a different situation. Not all botanists agree, not only out of general disagreement, but because the form of taxonomic classification for microspecies is different to typical botanical taxonomy. Microspecies completely ditch the concept of subspecies and varieties while pursuing an advanced, minute form of taxonomy. And so it's not always disregarding microspecies out of convenience, but because of different beliefs on what taxonomy should be. And that is not something that can be globally agreed on.

The way I see it, committing to microspecies taxonomy has no benefit except conforming to microspecies taxonomy. For iNaturalist, and citizen science, and even professional botany, this is not ideal. The current solution to me is to retain both officinale and erythrospermum as informal umbrella headings (as "complexes"), while also adding framework for microspecies simultaneously. This keeps all options available and while it is marginally less formal and sincere, it is the most functional outcome.

The current headings, even being "incorrect", allow a useful classification of Taraxacum observations. For that reason, these headings have been utilized by many datasets, authors, and organizations globally. The purpose of taxonomy is to categorize organisms for research, understanding, and conservation. As such, it seems amiss to drop what is already a proven approach to the situation, even if it isn't a complete and formal solution.

Posted by silversea_starsong almost 3 years ago

So my call would be to keep officinale and erythospermum as "informal" complex-level taxa. That can be done by simply editing the taxa at https://www.inaturalist.org/taxa/47602/edit and changing "species" to "complex", without taxon swaps. Then, allow entries to be made for microspecies headings under the correct sections where needed. It's a trend already used by Rubus fruticosus among other aggregate microspecies complexes.

Posted by silversea_starsong almost 3 years ago

@silversea_starsong are you proposing that the taxonomy would be this?:

Genus Taraxacum
-- Section Taraxacum
---- Complex T. officinale
------ (all sect. Taraxacum microspecies)

rather than:

Genus Taraxacum
-- Section Taraxacum
---- (all sect. Taraxacum microspecies)

(or what we currently have:

Genus Taraxacum
-- Section Taraxacum
---- (all sect. Taraxacum microspecies)
---- T. officinale
)

Posted by upupa-epops almost 3 years ago

The problem here is that it seems that T. officinale is a binomial that should not be used even for plants found in the area where it was described for some issues related to the type.
Apart this, maybe we could try to see the matter from the newbies' point of view. Seeing that the name T. officinale is allowed here (and almost always proposed by the AI) would just make them think that it is a good name and that they have photographed the real T. officinale. This means allowing a false truth or a cliché to be spread among people. We have the opportunity to try to make people reflect on what they find rather than taking for granted that every common dandelion is T. officinale.
In the end I think that there are already too many generalist website that take for granted these clichés (at least here in the old world almost every wild rose is Rosa canina according to many websites, etc...).

Posted by blue_celery almost 3 years ago

@loarie, @kueda

"What is a species" is a philosophical question that can be debated forever. Science is a practice. It must be based on empirical evidence, be repeatable and it should formulate a predictive hypothesis. Applying the single name *Taraxacum officinale" to the weedy plant familiar to everyone around the world is practicing good science. It accurately predicts that the plant in question is a an apomictic, troploid, weedy entity and has a well-defined range of chemical, genetic, morphological and behavioral variation. These are accurate predictions based on empirical evidence and they can be repeated (with the exact same outcomes) around the world wherever the plant is found. Application of the name may be too imprecise for some, but it is accurate and it is scientific.

Elimination of the name at the species level will preclude everyone from being able to practice science on the common Dandelion. Instead it will force everyone to engage in the unanswerable debate of "What is a species", which of course is unanswerable. If the only choice is "Taraxacum officinale complex", that means their plant is essentially unknowable. It means they have to choose from among 200-500-2000 possibilities based on imprecise, ambiguous and ultimately subjective criteria. That is not good science and most people will recognize that immediately.

iNaturalist is a fantastic tool that has helped 1.6 million people engage with Nature and has contributed valuable information leading to new discoveries about the natural world. When the average person (or botanist) goes out to catalog the organisms in their local park, they are hoping to gain a better understanding of nature, provide a useful predictive tool for others and just enjoy being outside with their fellow life-forms. What if they are unable to apply a name to the plant they know is very much like the plant in the next park and in their own lawn? If they are prevented from using empirical evidence and objective criteria to classify that plant, they will be unable to produce their catalog. They will be prevented from studying that plant in any meaningful way and they will be prevented from communicating to others what they found. They will be prevented from practicing science. And they will be discouraged from using iNaturalist for its intended purpose.

Eliminating the name Taraxacum officinale as a species concept will have profoundly harmful consequences. It will not help people engage with nature. And it will not facilitate research. It will force everyone to engage in the existential debate of "What is a species" at the expense of pleasure and curiosity.

Posted by danielatha almost 3 years ago

We have to live with genus IDs for plenty of common insects, plants, lichens, etc. Why is the name "Common Dandelions" so much worse than "Common Dandelion"?

Posted by upupa-epops almost 3 years ago

Never has someone said to me, after I explained how confusing dandelions can be, "ok I am going to stop engaging in nature and learning because of that". Usually it is "uh wow, plants are insane" and for the budding/enthusiasts, "where can I learn more?" and I can send them some info/links.

We aren't required or able to refine all observations to species rank and the catalog is still useful for observers and data users. Unknowable plants are a common reality offline and on iNat. That is a more valid depiction of the state of the science than the current situation on iNat re: the vast majority of species-level dandelion IDs.

Posted by bouteloua almost 3 years ago

It's true that some organisms are difficult to identify from photographs (or even DNA), but that does not mean they are not species as most people think of the term (with valid names). It just means we don't have enough evidence to consistently and accurately apply a particular name or concept. The situation with the common Dandelion is different. It is entirely possible and indeed happens all the time that one can apply the name "Taraxacum officinale" to a plant based on decent visual characters and to do this consistently across space and time. As I said, some may think this is is too broad a category, but it defines a well-known and very consistent assemblage of plants (albeit with internal variation) that is generally understood to be a "species" and has a whole suite of well-defined character states (morphological, chemical, genetic and behavioral) that are consistent from generation to generation (albeit with internal variation). This is the classic definition of a species and it can be applied with remarkable accuracy and consistency to these plants. The concept of "Common Dandelions" encompasses a constantly changing array of entities that are only vaguely defined on the basis of continuous and often very ambiguous characters. One person's concept of "Common Dandelions" is therefore subjective and can differ substantially from the next person's. This reduces botany to a matter of personal taste and opinion which is not scientific.

Using the name Taraxacum officinale in no way hinders the research on or discussion of the complexity of these plants and the concept of microspecies. Those choosing to are fully empowered to apply the name "Taraxacum" sect. Taraxacum or any other taxon name (like a microspecies name) to the plants without hindrance. But elimination of the name will severely handicap research and discussion of these plants for reasons I have explained. What is the purpose of this change and why the urgency?

I teach my students that plants are very pragmatic and cooperative and it is possible to know them intimately and to trust in their goodness and wisdom. It is we who act insane!

Posted by danielatha almost 3 years ago

iNaturalist is clear in the rules for curating and IDing: we should not have two different names used for the same taxonomic concept.

https://www.inaturalist.org/pages/help#taxonomydisagree
https://www.inaturalist.org/pages/curator+guide#policies

I don't think any of us here are acting insane, but dandelion taxonomy also isn't my thing so I am going to unsubscribe from updates on this flag. I'd also ask that people do not tag me. Thanks for understanding!

Posted by bouteloua almost 3 years ago

@upupa-epops said:

"We have to live with genus IDs for plenty of common insects, plants, lichens, etc. Why is the name "Common Dandelions" so much worse than "Common Dandelion"?"

The reason this is a different problem is because these two viewpoints are not conflicting, but different views on taxonomy to begin with. This is not a disagreement on whether observations can and should be identified at species level or otherwise, though I still argue that classifying these names is a benefit for reasons given above. But rather the founding of microspecies follows a different biological and taxonomical path, because it recognizes distinctions that are otherwise synonymized or considered inconsequential in "traditional" taxonomy.

iNaturalist's goal is to have a consistent (as possible) global taxonomy. And either direction here causes iNaturalist to then become inconsistent with one or the other approach.

So the only solution I see is allowing the framework for both viewpoints simultaneously, which is:

1- keep T. officinale and erythrospermum as complex headings. Whether T. officinale is kept at genus or under section Taraxacum is for debate.

2- allow entry for microspecies headings under the correct sections. This allows the specific entry for those who are able to use it.

T. officinale and erythrospermum are already informally used as a cluster name and have been (mis)used this way for decades. But it's come to a point that it's actually become beneficial enough to warrant keeping it around to distinguish these observations from "other" sections and species. That's why dismissing these on iNaturalist's end offers no solution, because other spaces are going to continue using it regardless of what the microspecies taxonomy follows.

Posted by silversea_starsong almost 3 years ago

The "state of the science" is not a fixed entity or entities, some of which are more valid than others. Nor can it be defined with any precision. It is a process--a journey of exploration and is never static. Likewise, one way of interpreting the data as microspecies or a vague assemblage is nothing more than a hypothesis just as Taraxacum officinale as a species is a hypothesis. I am not going say I know which is more "valid" and I am not going to prevent anyone from exercising their freedom to follow one hypothesis or the other.

Posted by danielatha almost 3 years ago

In no way did I mean to imply that any of us here were acting insane. I'm sorry if anyone took it that way. I just meant that the plants are doing what plants do (very successfully, I might add) and it is we humans that are confused- myself included!

Posted by danielatha almost 3 years ago

For me it comes down to a balance of accurate taxonomy and useful data. Which is why personally I see eliminating officinale and erythrospermum as causing too much harm, even if they are not very formal headings. Cases like this have happened before, and in some cases authors even opted not to split the species beyond variety or subspecies levels to avoid issues like this.

Posted by silversea_starsong almost 3 years ago

I really don’t want to interfere in the debate, but here is a viewpoint from across the ocean.
The taxon T. officinale has been out of use among botanists (professionals and amateurs) for more or less a century in my part of the old world, and I´m pretty sure that this “loss” has done nothing to diminish enthusiasm among naturalists. With iNat this “species”, which has not existed among us for a long time, has been reintroduced in very high number. It covers almost half of all new finds, and it seems to be identified more or less randomly. As far as I can tell, the knowledge and effort needed to correctly identify genus Taraxacum is approximately the same as needed for T. officinale. The most experienced expert in my country (not me) has spent a life-time studying dandelions. He is able to identify most (perhaps 90%) of all collected and dried specimens from the country and surroundings into species (or microspecies as termed by some). I once asked him whether some of the material he had seen could be T. officinale. His answer was: “I don´t know, I don’t know that species – and no one does”.

Posted by snedergaard almost 3 years ago

I see now and I must repent and kneel to the ambassadors of the Good Science.
And shame on you, who dared to foster the Bad Science by confusing the minds of the humble people telling them that their beloved Taraxacum officinale actually is a complex of species.

Posted by blue_celery almost 3 years ago

Some various points...
-- There is no urgency, I just flagged the taxon to note that the POWO change had happened and to spark the discussion.

-- Some of the objections here are to the recognition of microspecies, but hundreds of microspecies are already in iNat dandelion taxonomy and I assume they're going to stay? They are getting good use by a few observers in Europe (none of whom are career dandelion experts as far as I know). I assume iNat also has microspecies for Heiracium, I don't know what the situation is for other apomictic groups. Assuming the microspecies and section Taraxacum are staying, keeping T. officinale would be having two competing taxonomies at the same time.

-- T. erythrospermum is a valid species; in the strict sense I believe it's a non-weedy sexual Mediterranean dandelion, so it's not going away. (according to a French source I found, it's similar to T. rubicundum but with lots of pollen, araneous peduncles, and a bit smaller) However, I wouldn't be surprised if there are no observations of it on iNaturalist in the strict sense. I still don't understand why observations can't just be identified to section, since that wouldn't lose any information and it would allow the species to be used in the strict sense so those observations aren't lost among the thousands of others.

-- Many Erythrosperma microspecies do not have reddish achenes (their colour is important for keying them to species), and some members of other sections including Naevosa, Spectabilia, Crocea, and Celtica do have reddish achenes. In Europe it doesn't seem to be considered a reliable ID method for section.

-- As far as I know the concept of section Taraxacum has been fairly stable, although it has gone through some name changes. There are specific consistent characters used to identify plants to section. I'm less clear about the concept of T. officinale. Formally it's equivalent to section Taraxacum, but in practice, at least in North America, it's less clear because the Flora of North America key doesn't necessarily match how sections Taraxacum and Erythrosperma are defined in Europe, and was made before sections Borea, Boreigena, Celtica, Hamata, and Naevosa were discovered in North America (in the BC paper). Are all of those by default implicitly included in T. officinale?

Posted by upupa-epops almost 3 years ago

@blue_celery, I like the philosophical humor. We should all kneel before the mighty Dandelion and beg for enlightenment.

@snedergarrd, Admittedly, the situation is more complicated in Europe where there are sexual diploids and allied species to contend with. But in much of the rest of the world, particularly in North America, that is not the case (Iaffaldano et al. 2017). I could go just about anywhere else and point to a Dandelion and tell you a lot about that particular plant. I could describe its morphology in detail and the range of variation expected within and between populations. I could tell you that it is triploid and reproduces asexually by apomixis. I could tell you that it and it's offspring have 24 (rarely 32) pairs of chromosomes. And I could tell you that it grows in disturbed, eutrophic habitats, usually in full sun with little competition. And I could tell you that variations in morphological expression are correlated with environmental variables such as amount of sunlight, disturbance and soil chemistry and how these are expressed under what conditions. Of course there is much I don't know about the common Dandelion, but that is far more than I can say about most species I think I know well.

Posted by danielatha almost 3 years ago

Honestly the more I think about this situation the more it occurs to me the issue is less the taxonomy but more that the coverage of the known resources are practically missing or unexplored. I think if there was more widespread understanding on the microspecies things would be far easier. For instance, I'm 100% sure that the "erythrospermum" I see in the US, Australia and elsewhere on lawns is the same species which is likely Taraxacum subbracteatum or a relative.

Until the necessary research on specimens and populations has been done, it's going to be floundering all over. Personally I'm willing to put in the effort to ID these plants but the resources are just not available, and a lot of the US content is probably undescribed.

I'm also reviewing my talks about data and I'm no longer feeling much of a weight to defend T. officinale. It's too arbitrary, it's obsolete. I'm not going to lose sleep over it.

Posted by silversea_starsong almost 3 years ago

We could discuss on what a species is but I wonder if this topic is really crucial for the treatment to be adopted for common dandelions here. There are many honest botanists that study dandelions and verify if the morphological features observed in the field are maintained in cultivation (the same applies for other critical genera in which apomixy is frequent), and then proceed to see if the cultivated plants are different from the preivously described species. So, I would be glad if the whole sector of the research in Taraxacum taxonomy would not be delegitimated here.
On the other hand, I think that the discussion could be more productive if it would be directed in the direction of the possible reactions of the "average" iNat user towards the proposed taxonomic change. As regards, somewhere, it happened to read that "average" users are not interested in this matters and changing T. officinale into T. section Taraxacum (similarly, someone claims that users are not interested in subspecies(!?)) would only and unavoidably lead to confusion. Personally I would not take for granted this and I would be curious to see if an information campaign actually could be effective in raising people awareness on the complexity of these plants that are so commonly found in disturbed areas.

@danielatha I was sure you would have liked it. When I read about the "bad science" it was obvious that you were not serious.

Posted by blue_celery almost 3 years ago

@danielatha I appreciate your comments. Variations in morphological expression are certainly correlated with environmental variables, and this holds for every single species of the genus (including the non-weedy ones). However, thanks to the existence of i) type material from the original collection provided by the author of the species, and ii) reported results from cultivation experiments to test and verify the robustness of the distinguishing characters (as also pointed out by @blue_celery), it is possible for any researcher to examine, evaluate, and challenge the dataset behind a given (micro)species name. This is not the situation for T. officinale.
@silversea_starsong: Thanks for your latest comment. You have nailed it!
A further remark: With the current taxonomy, I´ll be reluctant to help identifying species found in North America. I have tried it a few times, where it was possible to identify the section, but the situation is awkward. Let´s say you have a find of T. officinale with research quality. There are several sharp photos of different parts of the plant allowing for an ID, which turns out to be sect. Hamata. To me, sect. Hamata is the correct and indeed more precise ID for the plant than T. officinale. However, in the mind of the finder, sect. Hamata would be less precise as he/she already has made a verified ID at species level. I feel that my interference would only serve to cause embarrassments and confusion by (apparently) bringing it to a higher taxonomic level.

Posted by snedergaard almost 3 years ago

@blue_celery @snedergaard I would like to see an accessible resource on Taraxacum section ID, one that is useable by the "general naturalist". At this point even serious botanists have a habit of passing them up, which is a terrible mistake. Largely it's because the information is not well publicized. Similarly, Rubus fruticosus ID suffers because the only comprehensive resource is an old book that isn't in print anymore.

Can we organize something like this? Starting off with the section ID, that anyone can use in any country. It would be a really promising start to improving data and educating users once officinale is taken down.

Posted by silversea_starsong almost 3 years ago

@silversea_starsong An acceessible world-wide key to sections doesn´t exist, let alone one that usable by anyone. I can see your point, but I´m afraid it is unrealistic. Even the resources from Europe are only local, typically covering one country.
The best available resource in this respect is probably the one from Britain, which is kept rather simple (see links above provided by @upupaepops). Can it be used in e.g. NA? Well, to a large extent I think it can, but of course. as long as it is more or less unknown what sections are present in NA, any resource from Europe will have limitations. However, by far the most finds of T. officinale is sect. Taraxacum, and the British section key will lead to correct ID in such cases.
This might work as a starting point until more research data become available.

Posted by snedergaard almost 3 years ago

Are sections not globally defined? I assumed that the characters that distinguish the sections apply anywhere in the world, by nature of their characteristics.

Posted by silversea_starsong almost 3 years ago

The sections are indeed globally defined, and their charactersitics are described in a large body of scientific literature. It could, in principle, be collected and reviewed to generate a comprehensive synthesis that covers everything. Would such a global resource be a meaningful tool for the average general naturalist? I guess it would not, as most sections tend to have a limited geographical distribution.

Posted by snedergaard almost 3 years ago

I think the first step to having useful local resources is to have a global one prepared. From there, it can be repurposed into country or local flora contexts.

Posted by silversea_starsong almost 3 years ago

I think there are decent number of sections in Asia and the Southern Hemisphere that are pretty much ignored elsewhere. Cichorieae Portal is probably the best collection of resources for everything. http://cichorieae.e-taxonomy.net/portal/cdm_dataportal/taxon/b86f1156-091c-494d-a9c9-c84d71058f98

Posted by upupa-epops almost 3 years ago

The UK keys don’t include some sections that are found elsewhere in Europe, so it would be nice to at least have one that includes all of those.

Posted by upupa-epops almost 3 years ago

@danielatha @davidenrique I am still confused as to how a taxon merge here would involve a loss of useful information for observations. Is there disagreement with this equation? I've seen all these terms being used interchangeably in various sources.

T. officinale = T. officinale sensu lato = T. officinale aggregate = T. section Taraxacum

If not, for individual observations it's functionally just a name change isn't it? For more casual users who only see the common name, there will just be a loss of the Research Grade status. More involved users who pay attention to scientific names will likely know that taxonomic changes happen regularly; there are constantly species being split or moved from one genus to another, etc., and that many taxa cannot be identified to species level from normal photos.

Posted by upupa-epops almost 3 years ago

I just skimmed through this discussion, so forgive me if I am repeating anything already said.

I have to wonder if the POWO taxonomy is still in flux here, and maybe we should wait to see where it settles out.

The reason I wonder that is that the current state of their taxonomy does not follow the International Code of Nomenclature. Any genus or subdivision of a genus has to have a species as its type, and must include at least one species.

As currently constructed in POWO, the taxonomic concept "Taraxacum sect. Taraxacum" may have a type, but it contains no accepted species, only non-accepted species listed as synonyms. It is an "empty" taxon.

Posted by jdmore almost 3 years ago

@jdmore I don't entirely understand how taxa between genus and species work in POWO, maybe you understand better and can help clarify? Do they even use them at all?

Taraxacum section Taraxacum is the only example I have been able to find so far, so I can't tell if POWO just doesn't use intermediate taxa and this is a weird exception, or if they do use them but I just haven't searched the right things. I tried checking genera like Carex, Solidago, and Quercus that I think have fairly well established subgeneric taxonomy and don't see anything...

If this is basically the only example, then I'm not sure if it's safe to infer anything from the way it's set up. Maybe they just want to indicate that there is this intermediate taxon but don't want to formally place it into their taxonomy? I don't know, this really confused me when it was set up as "T. officinale aggr." before, and everything is identical now except the name change.

Posted by upupa-epops almost 3 years ago

Yes, this is the first instance I have encountered of POWO using any classification between genus and species. And they are not even doing it right (yet, anyway).

I suppose they may have taken the position (understandable) that species taxonomy in Taraxacum is impossible, and just abandoned any attempt. The iNat taxonomic system certainly is set up in a way that we could still reflect what POWO has. But I have an issue with reflecting incorrect taxonomy (a section containing no species), even if it is POWO that is promulgating it.

From a purely nomenclatural/taxonomic viewpoint, one alternative for POWO is to recognize Taraxacum section Taraxacum (and other sections in similar situations) at species rank using the oldest available species name in the section. I understand that such a species may be meaningless biologically, but it would at least conform with ICN.

Or another alternative might be to "de-synonymize" the names currently included in the section, and accept them as species members of the section, even if the taxa they represent can't be circumscribed beyond the holotype of each name. Then we would just have to accept that most or all other specimens (and observations) can't be identified as any one of those species, and can only be identified at the rank of section. But then at least we would be using a valid section that contains at least one species.

Posted by jdmore almost 3 years ago

As I've mentioned elsewhere, I'm not at all familiar with the whole taxonomy of Taraxacum. Now I'm even confused about what is being proposed in the first place and the different options, so I'll just leave it to those of you who have looked into it in more detail.

Posted by davidenrique almost 3 years ago

@jdmore Wouldn't it also work for them to just not mention the sections, and accept all the species within the sections, like they've done for every other genus that uses sections? I think they're already doing that basically: http://powo.science.kew.org/taxon/urn:lsid:ipni.org:names:328762-2

From a quick look, all the synonyms they have under section Taraxacum are old synonyms of T. officinale, except one which I think is an old synonym of T. palustre. If it weren't for the fact that the section existed before they synonymized T. officinale with it, I would think that they only have it for that synonymization to work.

Your first suggestion is mentioned in this paper, which says:

Richards and Sell (1976) overcome the problem illegitimately by employing a macrospecies name equivalent to the section (and by implication the type of it) which is the earliest agamospecies name of certain status. … This practice seems contrary to the Code and should be ignored unless formal lectotypification has occurred.

I don't know the Code though so I don't know why the author says that method is illegitimate, since he doesn't go into more detail that what I quoted as far as I can tell.

Posted by upupa-epops almost 3 years ago

I'm not intimately familiar with what the nomenclatural issue(s) may be with the name Taraxacum officinale. But it may be that none of the species names that POWO lists in synonymy with section Taraxacum are usable names for some reason. Usually that can be resolved by designating a lectotype or neotype, but perhaps not in this case. So maybe they are accepting the only usable name they have available instead, Taraxacum sect. Taraxacum, as a placeholder for one or more yet to be available species names. The section does appear in POWO alphabetically with all the other accepted species-rank names under Taraxacum: http://powo.science.kew.org/taxon/urn:lsid:ipni.org:names:328762-2#children

Hopefully that "empty" section will be a temporary situation in POWO until an appropriate species name becomes usable.

Until that happens, I find myself leaning toward the camp here that prefers to maintain the name Taraxacum officinale as currently established and used in iNat taxonomy. Doing so would be analogous to something encouraged in the Code, which is to choose a lectotype or neotype, when necessary, in such a way as to preserve long-established usage of a name.

I think maintaining status quo in iNaturalist would do the least damage until Taraxacum experts and POWO are able to work out a more satisfactory nomenclature.

Posted by jdmore almost 3 years ago

In 2011 the type of T. officinale was intentionally designated to a specimen that is not identifiable past section level: https://www.jstor.org/stable/41059837

This was done to allow people to use either the T. officinale sensu lato macrospecies or the section Taraxacum section/microspecies taxonomy and have both be valid. It seems like a pretty convoluted decision but I guess the authors thought it was the least worst solution to the mess.

However, you can't functionally do both at the same time like iNat currently, and POWO formerly, was trying to do. It doesn't make sense to accept both officinale and a microspecies within officinale (e.g. T. ekmanii) as species.

Posted by upupa-epops almost 3 years ago

Thanks for that reference, definitely an interesting take on the situation, though likely not the last word. I love the quote that they included in their introduction:

To require, for example, the name Taraxacum officinale to be applied in the restricted sense of the extremely local Scandinavian endemic T. campylodes would bring ridicule on plant nomenclature.

Yeah, well, arguably not. :D

Posted by jdmore almost 3 years ago

I'm sharing a link to the forum discussion too just so there's connection between the various Taraxacum-related discussions.
https://forum.inaturalist.org/t/overlooked-dandelion-diversity-in-bc-and-everywhere-in-north-america/3808

@blue_celery @danielatha Not sure I'm ready to kneel before it or anything like that, but I am in awe by how much a genus like this can get people talking about taxonomy! :-)

Posted by nathantaylor almost 3 years ago

@nathantaylor quote:but I am in awe by how much a genus like this can get people talking about taxonomy!
This is exactly what such a genus like Taraxacum, that is so common and, at the same time, so complex, could allow in term of scientific divulgation

Posted by blue_celery almost 3 years ago

For what its worth, this is the most observose plant on iNat that's not accounted for in POWO directly or via a deviation.

It would be great to either get rid of this taxon or set up a deviation.

Short term, can we at least swap the two ssp in to the species? It doesn't look like they're being used much and that would at least simplify this a bit

Posted by loarie over 2 years ago

Yeah, I don't think those taxa are meaningful or being useful for anyone...
https://www.inaturalist.org/taxon_changes/95650

Posted by upupa-epops over 2 years ago
Posted by loarie over 2 years ago

It seems to me that most of the observations being IDed by the observers as T. officinale by us ordinary users (although I only mark T. sp. if I do observe) are mostly, in practice, applied to any Taraxacum, without any regard to sections and oft quite likely without any knowing of sections. OTOH even I I knew about the existence of the sections for many years, I had no idea that T. officinale F.H. Wigg isn't one of the particular apomyctic species in s. Taraxacum. Moving observations of Taraxacum officinale explicitly into the taxon "section Taraxacum" will likely include many observations that actually belong to other sections.

Posted by vladimir_fuka over 2 years ago

The species names, as they currently are, are basically meaningless anyway. Most users are identifying everything dandelion-like as T officinale or T erythrospermum, at random, depending on which one the CV suggests first. And then they immediately get confirmed to research grade by some other user who thinks it's a simple species to ID. I don't know how many observations have any kind of correct identification, but I suspect it is a very small percentage.

I'd really like to see them all combined into a complex.

Posted by graysquirrel almost 2 years ago

I do not really understand the part

"
Not accepted by

Typification of Leontodon taraxacum L. (= Taraxacum officinale F.H. Wigg.) and the generic name Taraxacum: A review and a new typification proposal (2011). Kirschner, J. & Štepánek, J. Taxon 60. [Cited as Taraxacum sect. Taraxacum.]
"

in the linked POWO resource https://powo.science.kew.org/taxon/urn:lsid:ipni.org:names:1003018-2

That very paper (Kirschner et Štěpánek) sets T. officinale as a synonym for section Taraxacum and explicitly mentions it as a possible name to use by non-specialists.

Posted by vladimir_fuka almost 2 years ago

I think it's because POWO has to list a source to explain why they aren't using a name, and in their template that's listed under the title "Not accepted by". For this case it doesn't work to have both T. officinale and sect. Taraxacum at the same time (because they're synonyms; you can only use one or the other). So they have sect. Taraxacum and then reference that source to explain why they don't also have T. officinale. Does that make sense?

Posted by upupa-epops almost 2 years ago

So swap Taraxacum officinale into Genus Taraxacum or Section Taraxacum? If no one really knows the difference between any of these taxa I don't think introducing a new complex node is going to help

Posted by loarie over 1 year ago

Any outcome here is probably not going to help as things stand...

Posted by silversea_starsong over 1 year ago

Technically, Taraxacum officinale = Section Taraxacum.
Practically, the vast majority of observations aren't identifiable to section and a lot of observations of other sections will have been identified as T. officinale, so it would be more convenient for identifiers to swap it to genus.

Posted by upupa-epops over 1 year ago

The complication is many if not most of the existing officinale observations are not referrable to section Taraxacum in the (proposed) expanded taxonomy.

Posted by silversea_starsong over 1 year ago

Regarding the observations from Italy, the vast majority are identifiable as Section Taraxacum, also because they are almost exclusive in urban areas. To be honest I am not so in agreement with the choice of synonymizing T. officinale with the section as to me it seems a nomen confusum.
Anyway, I think that possibly the best would be to ID the observations as Section Taraxacum, of course when posisble and when it's the case. It is time consuming but, maybe, it could raise awareness of a couple of users on such an issue.

Posted by blue_celery over 1 year ago

iNat isn't a taxonomic database, therefore it should not make its own taxonomic decisions. We should be following our selected taxonomy exactly and not trying to deviate and create our own. We should follow POWO and not use this species.

Posted by raymie about 1 year ago

@raymie we think, therefore we are, not we are because we believe. I will always take the freedom to disagree from the taxonomic authority when it is the case and to propose what I consider a more adequate alternative.

Posted by blue_celery about 1 year ago

@blue_celery You are free to follow whatever taxonomy you want - but you are not iNaturalist.

Posted by raymie about 1 year ago

thanks for descalating - POWO doesn't recognize Taraxacum officinale and is silent on infrageneric nodes so this isn't relevant. Lets focus on what we should do about Taraxacum officinale - thanks

edit: I stand corrected, I see POWO does not include this section https://powo.science.kew.org/taxon/urn:lsid:ipni.org:names:254151-1 odd

Posted by loarie about 1 year ago

@raymie I am part of iNaturalist and I can act as far as I am allowed by its rules

Posted by blue_celery about 1 year ago

I don't understand why you are arguing when you both agree about what should be done in this situation...

Posted by upupa-epops about 1 year ago

New forum thread about dandelions, to keep conversations connected: https://forum.inaturalist.org/t/about-those-dandelions/39650

As I said there, I think iNat doesn't really have any option but to follow the European section/microspecies system because it's the only consistent and global taxonomy system that exists for Taraxacum. This is regardless of my personal opinions about microspecies; I think North Americans are lumping too much here and Europeans are probably splitting too much.
T. officinale doesn't exist in that system and is a synonym of sect. Taraxacum, just as POWO has it. The FNA taxonomy only includes a small number of the introduced Eurasian aggregate species and on iNat we can't just decide independently how to classify other species/sections when they show up, or how to make that system cover all of Europe and Asia.

Does anyone have other alternatives that fit with iNat's taxonomy policies?

we try to match parts of our taxonomy to global taxonomic authorities. When that's not possible, we try stitching together regional taxonomic authorities (not recommended because of inevitable regional taxonomic conflicts ...)

Posted by upupa-epops about 1 year ago

Right now, there are 238 total observations worldwide ID'd to a microspecies in Section taraxacum, only 35 of those are research grade, and no species other than taraxacum officinale has more than 11 observations. In all of North America there are just 2 RG observations that are ID'd to microspecies. By comparison, there are 55,035 RG observations of taraxacum officinale in North America. Effectively zero of those could ever be reliably ID'd to microspecies, because there is no North American secondary source that respects the microspecies distinction to go off of. Regular IDers and observers do not have access to the primary literature. So you'd be instantly and permanently wiping out like 55,035 RG observations unless someone manually goes through and votes 'cannot be improved' for all of them.

Such a swap is hugely destructive for people's understanding of the site and ability to use it to connect with nature. Most entry-level users will view the site as a complete failure from an identification perspective if all the experts on the site put together cannot ID even 0.1% of simple dandelions, when every North American key anyone can find on the internet tells them it is very simple. Perhaps the computer vision could be manually overriden to call the section 'taraxacum officinale', or we would end up in a situation where the app is suddenly the worst CV app on the market because it cannot ID the most speciose plant species. Remember that the mission of the site is connecting people to nature first.

The situation might be different if it were possible to make a reasonably convincing showing that at least, say, even 10% of taraxacum officinale observations in North America could be ID'd to microspecies. If that cannot be shown, I struggle to see how the swap could have any scientific utility that could outweigh the cost.

It is also not true that the microspecies treatment is more global. The 'taraxacum officinale' treatment makes a single specific prediction for what species every relevant observation in the world should be called. Therefore it is both consistent and global. The microspecies treatment is certainly not global, because it assumes most dandelions are some undescribed species that will never be described because the regional taxonomic authorities will never recognize them. It also may not be self-consistent, if, as said above, not every taraxacum officinale observation is even in 'section taraxacum'. Bumping the taraxacum officinale observations even further, back all the way to genus certainly would cause actual loss of the underlying data about other species in the genus produced by identifiers.

I vote to just create an explicit deviation. While 'impure' taxonomically, the status quo is working fine from an Observer and IDer perspective, and the underlying intractable intercontinental taxonomic dispute is an unusual situation that inevitably requires an unusual resolution. Inat does not even have a rank called 'microspecies' so no matter what the solution will be in some kind of deviation from what is meant by the terms.

Posted by wildskyflower 10 months ago

"It also may not be self-consistent, if, as said above, not every taraxacum officinale observation is even in 'section taraxacum'"

That is correct, but it mostly means that those ID's are mostly incorrect and should not be in fact Tarraxacum officinale sensu Kirschner et Štěpánek 2011, but e.g., T erythrospermum sensu lato other respective broad sense species. I myself thought that I can reasonably recognize that the Taraxacum I am looking at is Taraxacum officinale=section Taraxacum and then the first time I tried to post something it was actually Taraxacum lacistophilloides that is considered to be sect. Erythrosperma. It is often just better to ID to genus Taraxacum because even "Taraxacum officinale" can easily be incorrect.

Or the name Taraxacum officinale as used here should be taken in the sensu latissimo as really the whole genus Taraxacum. It just should be noted somewhere. For example, this page https://observation.org/taxa/10719/?genus=Taraxacum explicitly uses Taraxacum officinale s.l. (incl. all sec.) and that makes it clear that all sections are included.

Posted by vladimir_fuka 10 months ago

However, doing the broadest sense T. officinale would mean differing from POWO, which is usually taken as a gospel, and would mean allowing synonyms to be used as a possible alternative, instead of the automatic redirection as done on iNaturalist in other cases.

Posted by vladimir_fuka 10 months ago

Ok, so if those are just normal mis-IDs to section, that is not a problem with inat's taxonomic concept, right? That is just a problem that can be resolved just through the normal community ID process. There are already plenty of situations where we deviate from POWO for good reasons, and as mentioned above it sounds like the POWO taxonomy apparently isn't even internally consistent on this point. I think in hopefully most of the situations where we have a true deviation it is sourced to another secondary source, and we do have other secondary sources we could cite for the deviation, such as the FNA or any other North American secondary source. This is part of the reason we won't be able to ID a split taxon in North America at all, even if we wanted to, because even if primary literature proposes species names in North America they likely won't be accepted by the North American secondary sources in the near future, so a split in North America would most likely just leave all of our taraxacum observations in permanent limbo where there simply is no valid inat species name to apply to them.

If I'm being honest, even knowledge of the impending possibility of the split has already discouraged me from observing taraxacum, even when I observe practically every other flowering plant species at a site. I don't really want to spend my time taking observations that may shortly become useless permanent needs ID filler.

Posted by wildskyflower 10 months ago

Well, the current situation's problems were described at the top of this thread. If someone does ID something to a microspecies, they must disagree with the T. officinale ID. And the current iNat taxonomy rules do not allow two valid names for the same entity. So now we have genus Taraxacum, we have sections (Taraxacum, Erythrosperma, ...) and we have T. officinale, no matter if it is meant to be equivalent to the former or to the latter, it cannot be used as a real equivalent of them. It is treated as a species inside the genus, one of many.

In my personal opinion, making it possible to ID as T. officinale while making it at the same time equivalent to either section Taraxacum or genus Taraxacum somehow would be a good solution. Or even merging to a taxon with a label that contains both names in the label might be viable.

BTW, at lest sections are known to North American botanists as shows the thread already linked by nathantaylor: https://forum.inaturalist.org/t/overlooked-dandelion-diversity-in-bc-and-everywhere-in-north-america/3808/11

Posted by vladimir_fuka 10 months ago

"making it possible to ID as T. officinale while making it at the same time equivalent to either section Taraxacum or genus Taraxacum somehow would be a good solution."

There is a really easy way to do this, which is to call the microspecies subspecies (or varieties, or forms, or whatever you want to call them) of taraxacum officinale. From a technical perspective, that is a compromise that completely fulfills all relevant parties needs; it is possible to refine without disagreeing, and it is possible to achieve RG at either or both ranks without contradiction. It naturally handles the fact that not all the micro species are known, and doesn't interfere with IDing them in the future if new ones are described. It doesn't mess up the computer vision's ability to help new users. It is consistent with keys available in secondary sources in North America. Implementing it could be done by one curator in less than an hour to with almost no re-indexing load on inat's servers. It is fully invertible with no loss of data if North American secondary sources do someday change their mind about recognizing microspecies.

I think this compromise is the best of all worlds, and I struggle to understand why anyone would dislike it from a purely practical inat-focused perspective. The best I can tell is that some people seem to think of a microspecies as much less ecologically important than a true subspecies, but inat doesn't have any less important terminal node to call it than a full 'species'. I think that issue doesn't really matter, because inat is not a resource for taxonomy. Whether inat applies the names 'subspecies' vs 'variety' vs 'form' vs 'microspecies' is just a minor nomenclatural/philosophical issue about the name as it appears on autocomplete suggestions. I think what we should do is just call them a 'subspecies', and all collectively agree that 'subspecies' is not actually what we mean by the concept, it is just the closest available label among the inat preset options.

Posted by wildskyflower 10 months ago

I think that issue doesn't really matter, because inat is not a resource for taxonomy. Whether inat applies the names 'subspecies' vs 'variety' vs 'form' vs 'microspecies' is just a minor nomenclatural/philosophical issue about the name as it appears on autocomplete suggestions. I think what we should do is just call them a 'subspecies', and all collectively agree that 'subspecies' is not actually what we mean by the concept

If we could be sure this approach would be limited to Taraxacum (and maybe a few other cases like it), I might be able to get behind this. My concern is that it could be the top of a slippery slope toward giving iNat curators license to "make up" any taxonomy they like, whether or not their names are published and scientifically validated.

Also, I'm not sure such "subspecies" would play very nicely with external partners like GBIF.

Posted by jdmore 10 months ago

I think external data users can handle synonymy, or deal with it; we would still list the proposed microspecies names as alternative names.

Are there many other examples of taxa where there is a fundamental intercontinental philosophical disagreement about the species concept? I'm not sure a slippery slope argument makes sense here because you can just as easily make an argument about there being a slippery slope of eliminating more practically identifiable species concepts in favor of super frustrating non-universally-accepted species concepts which will turn off users to the site and extend the average time to reach RG asymptotically to infinity. It is already hard enough to get anyone to ID aseteraceae to genus.

And, as has been said above, it seems undisputed that the microspecies are totally ecologically irrelevant; an entire microspecies going extinct would evidently have the same or less impact on biodiversity than a single individual dying would in any other genus, and introducing a new invasive dandelion microspecies to an area that already has another invasive dandelion microspecies would have no additional impact. So I'm not sure what scientific benefit classifying exported inat observations to microspecies has, other than conforming to classifying inat observations to microspecies.

Posted by wildskyflower 10 months ago

The slippery slope of how, when, and why we deviate from the taxonomic backbone of POWO is on a different aspect of the mountain (to carry the metaphor forward...), and we're already farther into that slide.

I am only addressing the issue of inventing scientific names on iNaturalist, e.g. making names at subspecies rank that have never been published and validated at that rank. That opens a door to taxonomic anarchy here which I would prefer to keep welded shut.

Not to say that both issues aren't potentially applicable in a situation like Taraxacum, but I want to keep a bright line between the two.

Posted by jdmore 10 months ago

Inventing names completely is a separate issue (which does also happen, but it would be better discussed there).

It is worth noting that at least as far as North America is concerned the 'microspecies on GBIF' formatting issue is almost purely theoretical, because there is exactly one total inaturalist observation on GBIF for all microspecies in Section taraxacum combined (and it is ID'd purely based on a UK-only key).

What we are talking about here is declaring that there are no extant described section taraxacum species in North America at all, so just either ID them to whichever putative European microspecies happens to look most similar, or actively discourage IDers and observers from trying to be helpful on a very common and easy taxa as they are learning to use the site. I think that is more of an anarchy situation. New users may think being told it is impossible to ID is a defect in the quality of their observation, which it is not; their observation could not be conclusively ID'd to microspecies even if they attached a full genome DNA sequence. I think it is easy to underestimate how discouraging that can be to a new user, and keep in mind that none of them are directly represented in the discussion on this flag.

Posted by wildskyflower 10 months ago

I think what we should do is just call them a 'subspecies', and all collectively agree that 'subspecies' is not actually what we mean by the concept

This would be an example of inventing a scientific name (if you mean ranking it as a subspecies in the iNat taxonomy), and so seems to be an issue here too. But maybe I misunderstood where you were going with that.

And BTW, genus Taraxacum is a perfectly acceptable ID, and can go to Research Grade. This is par for the course in many Arthropoda.

Posted by jdmore 10 months ago

I think there a couple major difference from Arthropoda where non-specific IDs are par for the course:
1.) The most up-to-date keys from the best available secondary sources do not claim Arthropods are easy to ID
2.) With Arthropods a dissection or DNA sequence would at least be helpful. With Taraxacum a DNA sequence would not even theoretically be helpful, even for regions where putative microspecies are described, because (https://www.researchgate.net/publication/265346629_Towards_a_better_understanding_of_the_Taraxacum_evolution_Compositae-Cichorieae_on_the_basis_of_nrDNA_of_sexually_reproducing_species):
"‘raw’’ nrDNA [...] is not very suitable for phylogenetic analyses in Taraxacum."
"the repeated multiple hybridization events in the history of most taxa make the exploitation of cpDNA for phylogenetic inference in Taraxacum problematic."
"the extent of cpDNA intraspecific variation encompasses the taxonomic limits."
"None of the basic nrDNA clades identified in the present study, however, matches any of the groups delimited by means of the cpDNA study."
"not even the most distinct and stable clades resulting from the nrDNA analyses can be recognised in the combined tree."
"not even the restriction of the analyses to sexually reproducing diploids did increase the congruence of the two data sets"
Whats worse is that that paper was only considering the relationships of 65 total representatives of 39 different sections, not the 3,000 supposedly distinct microspecies. To me, a group with 'repeated multiple hybridization events' across all pairs of taxa, where 'the extent of intraspecific variation encompasses the taxonomic limits' just kind of sounds like what we would normally call a 'species'. I'm not even trying to make an argument about the actual taxonomy though, just the practicality of IDing that version of the concept in practice with any tools that could possibly be available to site users.

I guess one option that is more or less implicitly what Wikipedia and several of the papers I looked at while writing this comment do, is just to assert by definition that the microspecies only occur in Eurasia and that taraxacum officinale sensu lato does occur in North America. I had kind of expected that version of the concept might be less popular, but at least it wouldn't require any hint of making up names, and I guess is also effectively just the status quo.

Posted by wildskyflower 10 months ago

would changing the microspecies' rank (and ancestry) but not their names, so they're still the same published binomials, just grafted onto species-level T. officinale, be an acceptable option? (as for what rank could potentially be used as a sort of placeholder in this scenario, hybrid is the only rank below species in the iNat hierarchy that doesn't automatically change how a name is displayed; subspecies, variety, and form all insert an abbreviation between the 2nd-to-last and last words of a name regardless of how many words there are, and infrahybrid removes italicization)

some pros: microspecies IDs no longer count as disagreements with T. officinale and unpublished names aren't introduced, while both T. officinale and microspecies remain reportable for whoever wants to do so and (crucially) T. officinale still goes to research grade automatically (saving the overwhelming majority of common dandelion observations from Needs ID purgatory, or alternatively the need for tens of thousands of manual DQA votes on preexisting observations and constant explanations of why the vast majority of dandelions on iNat can't get to species)
potential con: since hybrids aren't generally supposed to be grafted onto species, could doing so cause issues with things like what shows up in the species tab in Explore, how an observation ID is calculated, etc.? (also hybrid ≠ microspecies, but i don't think the word hybrid would be displayed anywhere really obvious)

Posted by maxkirsch 10 months ago

infrahybrid removes italicization

Not sure this would be such a bad thing, if it's being used for names not sanctioned by the Code of Nomenclature. And infrahybrid may actually reflect the origin of many microspecies.

Posted by jdmore 10 months ago

Infrahybrid actually wouldn't all that far off the truth, would it? Per the quotes that they are all hybrids of unknown parentage within Taraxacum? I didn't realize that infrahybrid would let you control the scientific name.

Edit: I checked, and there is indeed no consistency whatsoever in how scientific names of infrahybrids are currently rendered on inat, beyond that they have to start with the genus. So that rank should have the required flexibility.

Posted by wildskyflower 10 months ago

It is also not true that the microspecies treatment is more global. The 'taraxacum officinale' treatment makes a single specific prediction for what species every relevant observation in the world should be called. Therefore it is both consistent and global. The microspecies treatment is certainly not global, because it assumes most dandelions are some undescribed species that will never be described because the regional taxonomic authorities will never recognize them. It also may not be self-consistent, if, as said above, not every taraxacum officinale observation is even in 'section taraxacum'. Bumping the taraxacum officinale observations even further, back all the way to genus certainly would cause actual loss of the underlying data about other species in the genus produced by identifiers.

I want to clarify what you mean here since I feel like I disagree with all of it but maybe I'm just misunderstanding. It's been a while since I've thought about this topic so that's quite possible...
The microspecies treatment doesn't assume most dandelions are undescribed species; e.g. all the non-native dandelions in North America are presumed to be introduced European species that just haven't been identified in North America yet. Same thing in South America, South Africa, Australia etc.

As @vladimir_fuka mentioned, T. officinale by definition (in the literature) is equivalent to Sect. Taraxacum so any T. officinale observations that don't match Sect. Taraxacum have been misidentified. It can be difficult to identify dandelions even to section without good views of the leaves or at the wrong time of year, so many lower quality observations of dandelions should stay at genus (as is the case with many plant genera) regardless of microspecies discussions. I think the vast majority of identifiers don't know this, so not much (correct) data would be lost.
T. officinale is often used to refer to any of the complicated mess of apomictic weedy dandelions, which following that description does include multiple sections of the genus. However it also definitely excludes many other sections. Like would you call these dandelions T. officinale? Even European/North American members of Section Palustra look pretty clearly different.
https://www.inaturalist.org/taxa/1051010-Taraxacum-leucanthum
https://www.inaturalist.org/taxa/854364-Taraxacum-confusum
https://www.inaturalist.org/taxa/795603-Taraxacum-porphyranthum
https://www.inaturalist.org/taxa/869027-Taraxacum-leucoglossum
https://www.inaturalist.org/taxa/795597-Taraxacum-lilacinum

This segues to another major point which is that T. officinale/Sect. Taraxacum aren't the only taxa we have to deal with here. There are several other dandelion sections introduced to North America which have the same type of conflicts, and as far as I know Sect. Erythrosperma is the only one which has a clearly defined "macrospecies" equivalent name. What do we do with the others (e.g. Sect. Hamata)?

Inat does not even have a rank called 'microspecies' so no matter what the solution will be in some kind of deviation from what is meant by the terms.

A microspecies is still a species, it's not a different rank. The prefix just helps indicate that it's part of the weird apomixis situation where applying standard species concepts produces weird results.

Infrahybrid actually wouldn't all that far off the truth, would it? Per the quotes that they are all hybrids of unknown parentage within Taraxacum?

They're self-reproducing populations descended from hybridization events potentially thousands of years ago (I'd have to check for the specifics), as is the case for the origins of many other species.

Posted by upupa-epops 10 months ago

If there's a way to somehow keep the existence of T. officinale on iNaturalist, I absolutely agree that would make the website more accessible and understandable for newcomers and casual naturalists (especially in North America). But I don't see any way of keeping it that doesn't make a contradictory mess for botanists in Europe or people trying to make finer IDs in North America, or in terms of consistently following external taxonomy sources.

Posted by upupa-epops 10 months ago

However it also definitely excludes many other sections.
T. officinale by definition (in the literature) is equivalent to Sect. Taraxacum so any T. officinale observations that don't match Sect. Taraxacum have been misidentified.

I agree that we probably can't switch our species concept to taraxacum officinale sensu latissimo (i.e., the entire genus, as someone suggested above), which isn't used by either POWO or our commonly available secondary sources. I don't deny that there are probably plenty of bona fide mis-IDs among the >150,000 current taraxacum officinale observations if we take taraxacum officinale to mean just section taraxacum. We already have the ordinary community ID process to handle such mis-IDs, so the existence of a 'mess' of actual mis-IDs are mostly tangent to the discussion of the taxonomy because changing the taxonomy will not fix them.

While I don't think we really need to put all of the things we theoretically could under a macro species name, macrospecies names are available for a lot of the sections (see https://www.jstor.org/stable/1222201), for example:

Section Alpina = T. alpinum
Section Taraxacum = T. officinale
Section Erythrosperma = T. erythrospermum
Section Ceratophora = T. ceratophorum
Section Parvula = T. parvulum (accepted on POWO but missing from inat?)
Section Palustria = T. palustre
Section Mongolica = T. mongolica
Section Obliqua = T. obliquum
Section Spectabilia = T. spectacle
Section Calanthodia = T. calanthodium

Interestingly, all of those macro species names except taraxacum officinale are still listed as accepted by POWO, so I'm not sure we can regard the overall POWO treatment as self-consistent anyway. Hamata does look like a bit of an interesting case because the section was proposed relatively recently and so doesn't seem to really have had the type species name used as a macro species. It looks like every macro-species name that had previously been used to describe the plants in that section has been consumed under Section Taraxacum. Therefore if we don't want to put it under t. officinale, I guess we'd have to either just use the nominate species name despite there not really being a history of that, or leave it.

They're self-reproducing populations descended from hybridization events potentially thousands of years ago (I'd have to check for the specifics), as is the case for the origins of many other species.
all the non-native dandelions in North America are presumed to be introduced European species that just haven't been identified yet.

Right, but dandelions were introduced to the US 300-400 years ago. If every single hybridization/sexual reproduction event between agamospecies produces a new microspecies lineage, and even just 1 in a trillion dandelion reproductions are hybridization events, then there should probably already be a 300-400 completely undescribed dandelion microspecies in the US, assuming about a trillion dandelions grow in the US per year (say, 10 million suitable acres at an average density of 100,000 dandelions per acre? which is probably kind of low). This paper estimated that the hybrid seed production rate was actually more like 1/2000 when a sexual and apomictic species were in contact so 1 in a trillion feels pretty conservative. https://link.springer.com/article/10.1007/s10592-017-1014-y Even if the rate of producing an identifiably different lineage is somehow still much lower than that, it still feels like regarding them as basically infrahybrids isn't really all that far off.

But anyway the point of this discussion in the flags on inat isn't to resolve the overall taxonomic issues of genus taraxacum, its to come up with a workable ID scheme for site users. It doesn't really matter how many generations of apomictic reproduction you think it should take before you can call a 'hybrid/infrahybrid' a bona fide 'microspecies', just whether using the rank in that way interferes with any ID or export use cases, which I think it does not.

Posted by wildskyflower 10 months ago

I haven’t looked into the rate at which new microspecies are formed at all… I would assume that most hybridization events don’t produce successful populations given how many microspecies already exist that are all competing for niches?

Anyway yes, I think your system makes sense and would work, but we’d need to come up with a type species for every single section (and/or decide which sections to “lump” and which to keep as sections) and at that point we would definitely be creating a new taxonomy, which iNat curators aren’t supposed to do…

Posted by upupa-epops 10 months ago

I can't find any papers with even rough estimates but I'm not sure it can really be much slower than that. The UK apparently has over 200 microspecies and you've said most microspecies are believed to mostly be extremely regional in Europe (and can't be ID'd at all without location because the morphological differences are too minute), and the climate in the UK was totally different until maybe 10,000 years ago due to the last ice age. So we could guess the UK has formed maybe 1 microspecies per 50 years. The US (not even including the rest of North America) has 40 times the area to work with so probably far more total dandelions to have a chance to hybridize, so forming 1 new microspecies per year sounds like it would be about the right ballpark. Because there wouldn't have been competition for niches to adapt to the new ones likely wouldn't have gone extinct as fast as they would in a place with an established population.

But yeah the goal here is specifically not to do taxonomy, its to create a useful ID framework for the website. So we would only need to do the macro-species that are known to occur in the part of the world where they would be regarded as useful, and maybe not even all of them, maybe just the Taraxacum and Erythrosperma, or perhaps those two plus the ones were the macro species name is still listed as accepted by POWO; we don't need to designate types (there isn't a mechanism to anyway).

Posted by wildskyflower 10 months ago

Why are we still using this taxon? Why don't we just bump them all back to genus or section? Most of them should probably be RG at that level anyway.

Posted by raymie 25 days ago

@raymie I'm in agreement but to answer your question, the reason is that North American botanists don't have a good understanding of what introduced dandelion diversity exists here or how to identify it (and often don't recognize its existence). Since most iNaturalist users are North American, there's a lot of resistance to adopting a global system since that system isn't very workable here so far. Curtis Bjork is apparently working on adapting the Eurasian system to what we have in North America, but it's going to be a years-long project and I don't think it's his highest priority project.

Posted by upupa-epops 25 days ago

I don't see a problem with not being able to ID them to species at the moment. So we keep them at genus or section, doesn't seem like a big deal to me. I say we commit to removing this taxon.

Posted by raymie 25 days ago

I think there should really be no urgency to remove one of the top 20 most observed species on the site without replacing it with anything; I really doubt its existence bothers anyone who has not already commented on this thread. For practical purposes removing it would mostly just be an experiment in how chaotic computer vision suggestions can get if the correct answer for 100s of thousands of observations no longer exists as an option it can propose. The computer vision chaos will create an insane amount of work for actual IDers to fix continuously forever, and for that reason there is a good chance the change would eventually have to be reversed just to manage finite IDer resources; i.e. the non-existence of this taxon will bother people who haven't commented in this thread.

As I said before the infra-hybrid solution would address all practical concerns on both sides and is probably a better reflection of the actual truth of the matter. I really can't see a downside to it.

Posted by wildskyflower 24 days ago

From @loarie earlier in this thread:

For what its worth, this is the most observose plant on iNat that's not accounted for in POWO directly or via a deviation.

It would be great to either get rid of this taxon or set up a deviation.

The urgency is that all taxa on iNat are either supposed to follow their respective taxonomy source, or have an explicit deviation. As far as I understand following the iNat taxonomy curation rules, we shouldn't:
~ Leave a taxon unresolved indefinitely
~ Use a system that's inconsistent across the website and across the globe
~ Create deviations that don't have precedent in academic literature (preferable secondary sources)

Which means that we can't have T. officinale existing in North America but not in Europe (the current system, not globally consistent), and we also can't create new macrospecies concepts that don't exist in the literature. As far as I know there is no valid macrospecies system currently in the literature, and nobody is working on creating one or has plans to do so.

Posted by upupa-epops 24 days ago

Interestingly, all of those macro species names except taraxacum officinale are still listed as accepted by POWO, so I'm not sure we can regard the overall POWO treatment as self-consistent anyway.

@wildskyflower this is because T. officinale doesn't refer to a particular microspecies whereas all those other names you listed do. POWO accepts the microspecies and not macrospecies (since those are mutually exclusive). I can't access the Richards 1985 paper right now but as far as I can tell, he was listing the type species (microspecies) for each section, not naming equivalent macrospecies. Using those names for macrospecies requires redefining those names to no longer refer to specific microspecies, and instead refer the sections as a whole.

For example this is the established taxonomy:

Genus Taraxacum
~ Section Palustria
~ ~ Species T. palustre (type species of section)
~ ~ Species T. crocodes
~ ~ etc.

Converting that into this:

Genus Taraxacum
~ Species T. palustre
~ ~ Subspecies T. palustre ssp. palustre
~ ~ Subspecies T. palustre ssp. crocodes
~ ~ etc.

...would be creating new taxonomy. Or am I misunderstanding your suggestion?

Posted by upupa-epops 24 days ago

The type specimen of T. officinale was deliberately designated as an ambiguous specimen that's identifiable to section Taraxacum but not identifiable to microspecies (https://www.jstor.org/stable/41059837). That makes it an invalid species from POWO's perspective. However I guess this gives the option of keeping T. officinale and rejecting all the microspecies if we want to deviate from POWO, but I'm not sure about keeping the microspecies as subspecies or forms?

That would be calling these two observations the same species, for example: https://www.inaturalist.org/observations/158189977 / https://www.inaturalist.org/observations/43262639

This is harder to do with any other section because that process of defining the type species as equal to the section hasn't been done in the literature.

Posted by upupa-epops 24 days ago

i think the infraspecific idea is more along the lines of

genus Taraxacum
- section Taraxacum [?]
- - species Taraxacum officinale
- - - infrahybrid Taraxacum aberrans
- - - infrahybrid Taraxacum accedens
- - - infrahybrid Taraxacum acre
- - - infrahybrid Taraxacum acroglossum
- - - etc.

not changing the names of the microspecies, just changing their rank and nesting them within T. officinale

Posted by maxkirsch 24 days ago

If you want a secondary source for the 'macrospecies' concept you can have the FNA

For instance, the species most familiar to North Americans were introduced from Europe (T. officinale and T. erythrospermum; see below for a justification of the use of these names), possibly several times, and represent variable agamic complexes, but this variation appears continuous and multidimensional. There seems to be no utility for the users in describing a multitude of narrowly defined microspecies.

Describing them as subspecies is objectively incorrect; no one has contested that the individual microspecies are not sufficiently genetically or ecologically distinct to merit elevation to a full subspecies. As the FNA says the variation is continuous and multi-dimensional across the whole of plants called taraxacum officinale, which means that even full genome DNA sequences are not sufficient to definitively identify what microspecies a plant is.

This is the argument for the infrahybrid interpretation for inat purposes. First, there is the practical fact that for an infrahybrid on inat we can control the display name to match the microspecies name instead of the macro species name. Therefore unless a user goes into the taxonomy browser they do not even have to know that the taxonomy is constructed in a unique way. Therefore the handful of European users who think they can identify microspecies based on photos can use the site exactly how they want, and North American users can use it exactly how they want to just not 'refine' the ID to infrahybrid, and it will not produce any unintended disagreements, and it will allow observations to reach RG and enter the CV.

This also isn't really doing new taxonomy, it is just renaming the taxonomic node labelled 'microspecies' in the literature with 'infrahybrid' solely for the purposes of the inat database. We do this occasionally in other taxa in inat, because sometimes the taxonomic node name used in the literature is not available on inat and the staff would prefer not to create new taxonomic nodes. I guess another alternative would be that the staff could create a new taxonomic node name for microspecies, or rename infrahybrid as infrahybrid/microspecies or something. That would be more work for them though.

I don't think whether active revision work is or is not ongoing in North America is relevant to our decision-making here. It would be silly if after every discovery of a new genetically identical individual is given a microspecies name some other publication had to come in and say 'nuh-uh we don't agree with that taxonomy' to make sure they have the last word on the topic. So if anything the lack of active revision work should cause us to not blow up the taxonomy in favor of a hypothetical future newly revised taxonomy that likely will never come.

The argument for why the infrahybrid interpretation is probably closer to the truth anyway is that the microspecies cannot interbreed with themselves (because they are identical), they can usually only interbreed with members of other microspecies. Individual plants may reproduce asexually 99.999% of the time (the rate varies and is not well known) but when they do reproduce sexually, it is always or almost always with members of a different microspecies. Therefore, there offspring are either a new 'microspecies', or, arguably more sensibly, an infrahybrid between two variations within the same species. The only reason I think this argument matters for inat purposes is that the fact that 'infrahybrid' is probably close-ish to the truth seems to have made the 'infrahybrid' node name more palatable to other curators in this discussion than 'subspecies', 'variety', or 'form'.

Posted by wildskyflower 24 days ago

@upupa-epops
"and we also can't create new macrospecies concepts that don't exist in the literature." I think that sections work well for this scope.

"I'm not sure about keeping the microspecies as subspecies or forms?" please NO, I think that the combinations do not even exist.

It is unlikely but there will always be the possibility that someone would identify to species a dandelion. So, I think we should guarantee this possibility keeping all the names of the microspecies.

@wildskyflower
"I think there should really be no urgency to remove one of the top 20 most observed species on the site without replacing it with anything; I really doubt its existence bothers anyone who has not already commented on this thread. For practical purposes removing it would mostly just be an experiment in how chaotic computer vision suggestions can get if the correct answer for 100s of thousands of observations no longer exists as an option it can propose"
Sad but true. There is still the possibility to ID observations at the section rank and, in the case, to explain users that T. officinale is not a valid name. Researchers could just consider all the T. officinale observations as section Taraxacum. Anyway, there is also the possibility that many T. officinale observations are a section different from Taraxacum (e.g. Erythrosperma).

Posted by blue_celery 24 days ago

(re: benefits of infrahybrid over subspecies, variety, or form—infrahybrids also don't get "ssp.", "var.", or "f." automatically inserted into the name displayed on observations, taxon pages, etc.)

Posted by maxkirsch 24 days ago

Ahh okay thanks, I wasn't familiar with the infrahybrid rank.

Posted by upupa-epops 24 days ago

@blue_celery

Sad but true. There is still the possibility to ID observations at the section rank and, in the case, to explain users that T. officinale is not a valid name.

Remember that breaking the CV also breaks Seek. Many Seek users are children, and most do not even know the inaturalist website exists, and will never have an opportunity for an expert discussion on the inat website. Instead what will probably happen is that they download Seek, take a picture of the nearest plant to test it out which will often be a dandelion, and Seek will either not be able to identify it or ID it as Youngia japonica, Tussilago farfara, Hypochaeris radicata, Sonchus asper, or any number of random other things that look vaguely like a dandelion, because it can no longer ID anything in taraxacum. They may then do some combination of:

1.) Realize the app is useless and delete it in favor of one that works as expected
2.) Not realize the app is wrong due to an arcane philosophical taxonomic disagreement and go on believing that dandelions and Sonchus asper are the same thing
3.) Click the upload to inat button with the incorrect ID and never be available to fix it, forcing no less than 3 IDers per CV mis-ID to take the time to dig through all of those other genera for mis-IDs and fix it before the CID can even get back into genus taraxacum.

Creating an unnecessary flood of hundreds of thousands of CV mis-IDs for volunteer IDers to fix in triplicate is not harmless or an 'oh well' situation, it creates a signficant strain on already limited supply of volunteer IDers, especially because fixing this particular kind of mis-ID is particularly tedious because it is always the same, does not feel especially rewarding to fix, and because it is in asteraceae. The fact that it is in asteraceae is particularly significant because the supply of people wiling and able to ID in asteraceae is already extremely limited and many observations are stuck at a high level; Asteraceae is just behind Poaceae for # of observations stuck at family exactly, but it gets worse: the #1 most 'stuck' plant sub tribe is also in asteraceae, the top 4 'stuck' plant tribes are all in asteraceae, the top 6 'stuck' plant subtribes are all in asteraceae, and 4 of the top 10 'stuck' plant genera are in asteraceae (including taraxacum). Anything that makes a subset of asteraceae even more of a mess than it already is makes the ID workflow even more strained, and the site has reached a scale where it just cannot really function (much less continue to grow) without CV doing the lion's share of the 'easy' work of suggesting basic IDs for novice users.

Posted by wildskyflower 23 days ago

The AI will be able to ID Taraxacum, just not to species level, right? Or is that incorrect?

Posted by raymie 23 days ago

Surely the CV will just go to genus if there's confusion with species or sections? That's what happens with plenty of other genera, and that's fine.

I also don't think downstream impacts on the CV should influence taxonomy decisions... If taxonomy causes problems with the CV then that's an issue with the CV.

Posted by upupa-epops 23 days ago

I picked the species I mentioned based on the first CV suggestions that weren't taraxacum officinale or taraxacum erythrospermum from a random sample of a few observations. I think they are representative the kind of mistakes the CV could make. When I turn off 'expected nearby', I get taraxacum platycarpum most often. Maybe you are right and eliminating taraxacum officinale will coincide with a rapid North American invasion of taraxacum platycarupum instead, I don't know.

I don't think the CV can add the naked genus as a node for suggestions if taraxacum officinale and erythrospermum are eliminated but taraxacum platycarpum et al are not, because I think it can only have a genus as a CV node if it has no descendants that are CV nodes.

I also don't think downstream impacts on the CV should influence taxonomy decisions... If taxonomy causes problems with the CV then that's an issue with the CV.

I'd replace the word 'CV' with 'site user's needs' in that statement and check how it sounds. If the staff had unlimited manpower and resources they could probably code a taraxacum-specific workaround, but they don't and also don't like coding narrow workarounds that they have to maintain. For example, when a few avian hybrids caused a problem with the CV model that started causing mis-IDs another one of the top-20 most observed species (mallards), they just removed all hybrids from the CV model. That was 3 years ago, and they still have not had the bandwidth to work on adding any hybrids back to the model, even though the lack of hybrids in the model causes other problems elsewhere. It is just that big of an issue for the site to be consistently messing up even one super-observose species. And that was for a problem with mallards, which do not suffer from any real shortage of IDers, much less the kind of shortage of IDers that asteraceae does.

Posted by wildskyflower 23 days ago

T. erythrospermum will not be removed, as it's in POWO.

Posted by raymie 23 days ago

In the interest of discussion progress, I just picked a random microspecies (Taraxacum subtile), and moved it into how it would look in my proposed compromise: https://www.inaturalist.org/taxa/747413-Taraxacum-subtile. Please take a look and see how you think it looks.

Taraxacum subtile has no observations and the taxon page has no info, so I hope that using it for a demo for a few days is ok.

Posted by wildskyflower 23 days ago

Although most T. erythrospermum observations should also be identified back to genus level...

But this hypothetical doesn't make any sense to me and seems very over-dramatic. If the taxonomy is changed then the CV will change accordingly and act properly. It already acts the way I would hope it would act.

These are representative of the two different results I get from trying the CV on random dandelion obs:
https://gyazo.com/da802647bf8a8cd99525f11d002efbb4 (for most of them)
https://gyazo.com/4cc6dfc262c531aca6f0850693ff5931

The first one is suggesting the genus, perfect. In the second one the CV has no idea what the plant is (I dunno why, the photo was clearly a dandelion) and is just listing random species. That's a general issue with the CV that isn't relevant here; if it can't tell apart a dandelion and a hawkweed then it should suggest Tribe Cichorieae instead of listing random species.

Am I missing something?

Posted by upupa-epops 23 days ago

@wildskyflower I know that many users who post the "average Cichorieae observations" (only the capitulum from above) are young. And it is just for this reason that I am concerned. Are we feeding the "lie" that all such plants are Taraxacum (officinale)?
After all, I think that one of the most important problems is the settings of the CV. I do not know if it is techically feasible but in many cases it should suggest only the family or, at most, the tribe, without any other possibility.
The same often happens for Rosa. Here if single-flowered they are often suggested as R. canina, if double-flowered as R. chinensis or, alternatively, as R. gallica. And, unfortunately, people are more and more confident in artificial "intelligence", while less and less in humans.

I have posted a "test observation" in which everything for the correct section identification (achenes colour, inner leaves shape, outer phyllaries shape) is provided:
https://www.inaturalist.org/observations/204900224
Yet the CV suggests T. officinale as first choice.

With observations lacking all the necessary characters even more so it should limit its suggestion to a higher rank.

Posted by blue_celery 23 days ago

On the web CV only looks on the first photo. On the mobile app, it is more ambitious and evaluates every photo separately. Also, the answers from the web and for the first photo on the mobile app can differ. For the first photo it offers T. officinale, erythrospermum, platycarpum, ceratophorum, mongolicum, formosanum, Anemonoides sylvestris, T. cyprium, T. bessarabicum, L. hispidus.

For the side view of the capitulum it does actually show that many Taraxacum species could be candidates. For the photos of the green parts it often puts members of other genuses first (hyoseris, Cirsium.

The species that is most often numer 1 is actually T. ceratophorum.

I am honestly very surprised that so many species made it to CV at all.

It is possible that the CV IDs are influenced by my previously deleted ID.

Posted by vladimir_fuka 23 days ago

I am actually also concerned about T. erythrospermum. It seems to me that many RG observations of this species are in a clear opposition to the determination key in our national flora made by well-known specialists (Kirschner, Štěpánek, Trávníček, Vašut) although I also just may be not qualified to judge such a thing.

Posted by vladimir_fuka 22 days ago

The species concept of Taraxacum officinale has been abundantly studied and tested. Multiple lines of evidence from diverse studies all indicate that there is a single, cosmopolitan entity with phenotypic and genotypic traits that are discreet, quantitative and coherent. Yes, there is diversity within the species and yes, there are multiple species of Taraxacum, but it has been shown time and again that the diversity within populations of Taraxacum officinale is greater than the diversity between populations. See references below.

Hypotheses should be continuously tested with new evidence and methods. By throwing away centuries of study and eliminating Taraxacum officinale from the system available on iNaturalist will severely compromise iNaturalist as a useful scientific tool. Science is supposed to build on previous work, not start from scratch every time. The current system does not hinder inquiry or research on Taraxacum. It is undeniable that elimination of the name will.

The rejection of Taraxacum officinale is a legitimate hypothesis and should be debated and tested. But to overturn centuries of research on scanty evidence and debatable theory is irrational and will have many predictable harmful consequences.

Listed below are a tiny sample of studies supporting the species concept of Taraxacum officinale from my journal post on Taraxacum erythrospermum https://www.inaturalist.org/journal/danielatha/48774-on-the-status-of-red-seeded-dandelions-taraxacum-erythrospermum

King, L.M. 1993. Origins of genotypic variation in North American dandelions inferred from ribosomal DNA and chloroplast DNA restriction enzyme analysis. Evolution 47: 36–151.

Lyman, J.C. and N.C. Ellstrand. 1984. Clonal diversity in Taraxacum officinale Compositae), an apomict. Heredity 53: 1–10.

Mayr, E. 1992. A local flora and the biological species concept. American Journal of botany 79: 1537–2197 https://bsapubs.onlinelibrary.wiley.com/doi/abs/10.1002j.1537-2197.1992.tb13641.x

Riesberg, L., T.E. Wood and E.J. Baack. 2006. The nature of plant species. Nature 440: 24–527. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2443815/

Solbrig, O.T. 1971. The population biology of dandelions. Am. Sci. 59: 686–694.

Solbrig. 0.T. and B.B. Simpson. 1974. Components of regulation of a population of dandelions in Michigan. J. Ecol 62: 473–486.

Solbrig. 0.T. and B.B. Simpson. 1977. A garden experiment on competition between biotypes of the common dandelion (Taraxacum officinale). J. Ecol. 65: 427–430.

Stewart-Wade, S., S. Neumann, L. Collins and G. Boland. The biology of Canadian weeds. 117. Taraxacum officinale G.H. Weber ex Wiggers. Canadian Journal of Plant Science 82: 825–853.

Taylor, R.J. 1987. Populational variation and biosystematic interpretations in weedy dandelions. Bulletin of the Torrey Botanical Club 114: 109–120.

Verduijn, M., P. Van Dijk & J. Van Damme. 2004. The role of tetraploids in the sexual–sexual cycle in dandelions (Taraxacum). Heredity 93: 390–398. https://doi.org/10.1038/sj.hdy.6800515

Wassink, E.C. 1965. Some Introductory Notes on Taraxacum officinale L. as an experimental plant for morphogenetic and production research. Mededelingen Van De Landbouwhogeschool, 65–16. Wageningen: Veenman.

Posted by danielatha 22 days ago

@danielatha no offense but all those observations may just demonstrate that in that area there could be many (micro)species.
Sometimes it is hard to discriminate between red or brownish-red achenes with photos. It may largerly depend on light and on camera settings.
In all that observations of fruiting capitula how can you say that the outer phyllaries have no horns? On the contrary, here they are clearly horned: https://www.inaturalist.org/observations/30449058
As regards, just the outer phyllaries count for this latter character.
Just to make things even more complicated, there are species attributed to section Erythrosperma (which is just a name) that have light brown or pinkish achenes.
Plants with light brown achenes and growing in anthropic habitats are more likely belonging to section Taraxacum which has not necessarily less divided leaves. It is quite common to find them mixed with other of the section Erythrosperma and this should not suggest that they are just the same.
I agree that there is usually a large variability but this often occurs intraspecifically. Measuring the variability inside a "population" may be risky since such "populations" may actually be a mixture of many microspecies.
In the end, it could be useful to take a look also at the literature from the old world.

Posted by blue_celery 22 days ago

@blue_celery @vladimir_fuka Lets keep the discussion here confined to T. officinale; I agree that there appears to be a separate and surprisingly sharp disagreement between North American and European sources about whether T. officinale and T. erythrospermum are well-supported as distinct groups, but that is a debate about taxonomy that will have to be worked out in the literature. For inat purposes there is currently no debate about that we should keep T. erythrospermum, and if you do want to discuss that I would suggest doing it in a new flag on T. erythrospermum, or if you just want to discuss the disagreement generally do so in the comments of the journal post, or a new forum post.

To add to the list of sources, I find the discussion in this one particularly compelling:
Nijs, J.C.M.. (1997). Taraxacum: ploidy levels, hybridization and speciation. The advantage and consequence of combining reproductive systems. Ecology. 19. 45-56.

To avoid repetition and connect the discussions, I have discussed my interpretation of that source and about 5 additional ones in comments on an ongoing forum discussion about this issue: https://forum.inaturalist.org/t/my-dandelion-manifesto/49999/74?u=wildskyflower

Posted by wildskyflower 22 days ago

@snedergaard @davidenrique @raymie @jdmore @silversea_starsong @nathantaylor @loarie @maxkirsch @graysquirrel @sambiology @danielatha @srall @sedgequeen @dysm @charlie @jasonhernandez74 @comradejon @holyegg @blue_celery @vladimir_fuka
I would appreciate any more feedback on the infrahybrid compromise that I have demoed with T. subtile (https://www.inaturalist.org/taxa/747413-Taraxacum-subtile). You can review how the taxon page looks, and please feel free to test how it works for ID purposes with this test observation I made (https://www.inaturalist.org/observations/204926150).

For anyone just tuning in who doesn't want to read this whole thread, the compromise proposal is as follows: keep T. officinale as it is, and agree to interpret the existing taxon rank of 'infrahybrid' to mean 'microspecies' for this purpose on inat. Then we move all of the existing microspecies to infrahybrids of the (macro)species T. officinale.

The advantages:

1.) It is possible to refine IDs to research grade at microspecies without disagreeing with T. officinale IDs
2.) It is possible to ID to T. officinale in the conventional sense and reach research grade at T. officinale, without DQA votes
3.) Interpreting the microspecies as infrahybrids is close-ish to the truth in either taxonomic hypothesis, so it does not require any significant distortion of the conventional meaning of the word 'infrahybrid', or doing any new taxonomy on inat
4.) There is no standardized naming convention for infrahybrids, so we can just use the bare microspecies names as the display names, which will make the unusual taxonomic structure essentially invisible to most inat users
5.) T. officinale will remain in the computer vision, and thus can be suggested to Seek users and on upload, to prevent the chaos of 10s of thousands of CV mis-ID'd uploads
6.) The microspecies will not be eligible to enter the CV, avoiding a future scenario where just one of the hundreds of microspecies gets enough IDs to be CV-eligible and then the CV starts IDing all T. officinale as that microspecies

The only cons that I can think of:
1.) It is a deviation from POWO
2.) The 'species' tap in the 'explore' webpage will lump all observations as T. officinale for the purpose of counting occurrences. It is still possible to get this information other ways, see https://www.inaturalist.org/flags/655973.

If we do decide to go with the infrahybrid compromise, I think we should source the deviation to:

Kirschner, Jan, and Jan Štěpánek. “Typification of Leontodon Taraxacum L. (≡ Taraxacum Officinale F.H. Wigg.) and the Generic Name Taraxacum: A Review and a New Typification Proposal.” Taxon, vol. 60, no. 1, 2011, pp. 216–20. JSTOR, http://www.jstor.org/stable/41059837. Accessed 2 Apr. 2024.

Which is the source that proposes the current lectotype for T. officinale and says:

Non-specialists can continue in using the name T. officinale in the generally and traditionally adopted way: it is equal to what is called common dandelions

Note that despite it's endorsement of the continued usage of T. officinale for non-specialist purposes, this source is actually the primary source POWO cites for not accepting T. officinale, so it is undisputedly a respected and relevant source.

Posted by wildskyflower 22 days ago

Personally, I don't see what advantage there is keeping around T. officinale at all. Like, what are we trying to accomplish by keeping it around. It's a deviation from POWO to keep a taxon that's widely agreed (at least within its native range) to not exist. No information is lost by synonymizing this with section or genus.

Posted by raymie 22 days ago

I think we should continue allowing use of Taraxacum officinale. Technically it's not correct (99% of the time, at least) but (1) anybody researching Taraxacum will understand this problem and be able to cope with it and (2) people want a species name and being unable to get one for as simple, common, obvious as plant as the dandelion would be confusing and discouraging. I would argue for the pragmatic approach -- even though I regularly ID all dandelions as Taraxacum (genus) and sometimes explain why.

Posted by sedgequeen 22 days ago

I 'vote' yes to the proposal. T. officinale is an important 'bucket' for a lot of people to track this species-ish thing and it's so frequently observed on this site, i think it's much better to have that than to describe to literally every iNat user why we don't while also creating a mess of difficult to manage genus level stuff. iNat just isn't set up to stuffing things up to genus, and it causes a lot of problems.

Posted by charlie 22 days ago

@sedgequeen We leave lots of taxa at genus level - what makes dandelions different? Not every observation can be IDed to species level, and that's okay.

Posted by raymie 22 days ago

why are you so intent on forcing things that are usually impossible to identify on everyone using a citizen science platform, even though you can still use them under this proposal? Is it just some really intense loyalty to POWO? Some reason you're angered by the older taxonomy? It would help to understand why you are so outraged by this idea.

Posted by charlie 22 days ago

I feel no loyalty to POWO specifically, but in my opinion we should pick a taxonomy and stick with what it does. POWO is the plant taxonomy iNat has chosen, and IMO this means we should be following it to the letter. We're following our chosen taxonomies exactly for many other groups, and I see no reason plants should be any different.

I'm not exactly outraged to be clear, I'm just really confused why people seem so intent on keeping this taxon. Especially since authorities in Europe pretty much universally consider it to be invalid and iNat users generally seem to be using it as nothing more than a wastebasket.

Posted by raymie 22 days ago

@raymie @charlie Opinions noted, lets avoid having any back and forth until others have had a chance to chime in so it is easier to follow the thread.

Posted by wildskyflower 22 days ago

iNaturalist is a fantastic tool that has vastly expanded the availability of biological data for research, conservation and education. It is not where scientific hypotheses are presented and adjudicated. That is the purpose of scientific journals with peer review. Without a doubt, the elimination of Taraxacum officinale as an available name for observations on iNaturalist will cause great confusion and immediately and drastically reduce the number of observations of this group, thereby compromising iNaturalist's utility as a research and learning tool.

Posted by danielatha 22 days ago

Ah, but no doubt, the existence of such a name will undoubtedly cause many observations to become misidentified. Why would it cause a reduction in observations of Taraxacum? Other unidentifiable plants such as burdocks still get posted to iNat all the time.

iNat is not where scientific hypotheses are presented and adjudicated. Therefore, we should not be using species that don't exist in the taxonomy we have chosen to follow.

Posted by raymie 22 days ago

@raymie.... Identification of an observation at genus rank because the evidence is insufficient to identify it at a lower rank does not imply a judgement on the validity of the constituent taxa.

Posted by danielatha 22 days ago

Did I imply otherwise?

Posted by raymie 22 days ago

@raymie @danielatha Again, please just put a pause on any back and forth for a bit to keep this section of the thread condensed for easy future reference.

Posted by wildskyflower 22 days ago

Forgive me if I say something silly, this is the first time I've waded into one of these debates, and there are some things I don't really understand. In an ideal world, I think we'd follow POWO. That's (probably?) my preference (I think the problems it presents could be resolved). But if most are supportive, I could certainly get behind the general idea of:

Genus: Taraxacum
Species: Taraxacum officinale
Infrahybrid: All the micro-species

Question/point of clarification though - what becomes of all the current sections? Best case, I'd say our taxonomy would go:

Genus: Taraxacum
Section: Taraxacum (And only Taraxacum - basically as a shell; no observation would belong here)
Species: Taraxacum officinale (almost every observation would wind up here)
Sub-species: All the POWO recognized sections (including, yes...Taraxacum)
Infrahybrid: All the micro-species, placed under the appropriate "sub-species" where possible

Is that a deviation that can be reasonably sourced? Is there some support for that? Is that actually what you're proposing, @wildskyflower, and I'm just confused? My concern is that if we still have that section split right after genus, we haven't really solved any practical issue, because we still can't, for the most part, legitimately ID to species. Also, I'm curious where the native dandelions (presently set at species) go in this rubric. I'm not fully comfortable here, as it seems we're mostly just inventing a taxonomy (even if we have a "source" (nothing against the source, for sure)), but a taxonomy like described could potentially solve a lot of our (perceived) practical problems, while still allowing for micro-species science and a way to legitimately chart iNat taxonomy to POWO taxonomy.

Posted by comradejon 22 days ago

The advantage of following POWO is because it's basically the only option where we aren't just inventing our own taxonomy.

Posted by raymie 22 days ago

@raymie While I understand your thinking, there is also the problem that most of the broad floras for North America still use T. officinale. In time, as these floras are (hopefully) updated, this could change, but as it stands, I believe there needs to be some taxon on iNaturalist that can be correlated with its corresponding concept in published floras.

As I see it, Erythrosperma is the more problematic section because of the doubt as to whether T. erythrospermum s. s. even occurs in North America at all. But, again, published floras still mostly use that name, and it is important to maintain that bridge of usefulness until the floras are updated.

Posted by jasonhernandez74 22 days ago

@comradejon this change would not affect any of the other sections; it only affects section Taraxacum. The others would remain their own sections and their species and microspecies would remain as formal species on iNaturalist, as far as I understand it (some sections have more clearly defined species that make sense, others have similar confusion to sect. Taraxacum but they'd be even more complicated to resolve).

There are species and sections in Taraxacum that are clearly distinct from T. officinale and section Taraxacum, e.g.:
https://www.inaturalist.org/taxa/795603-Taraxacum-porphyranthum
https://www.inaturalist.org/taxa/854364-Taraxacum-confusum
https://www.inaturalist.org/taxa/1076477-Taraxacum-dissectum
https://www.inaturalist.org/taxa/793808-Taraxacum-pacheri
https://www.inaturalist.org/taxa/1047467-Taraxacum-crocodes

Flora of North America lumped sect. Taraxacum together as T. officinale and sect. Erythrosperma together as T. erythrospermum. Since then my impression is that North American botanists having been trying to force any non-native dandelions into one of those two buckets, but there are other non-native sections present as well (based on the BC paper). So this change helps with some of the confusion but sect. Erythrosperma and other sections that don't have a designated macrospecies would be staying.

Posted by upupa-epops 22 days ago

@comradejon POWO lists Section Taraxacum as accepted as a species, exactly synonymous with T. officinale but called a Section. Note that this is an extremely unique decision on their part; POWO generally does not deal with sections, and in fact there is exactly one other Section in all of POWO's database; Ranunculus sect. auricomus.

The unique setup is necessary because the name T. officinale is an undisputedly legitimate name, with an undisputedly legitimate description, and has priority over all other names in the genus, and therefore T. officinale is the type species for the genus per the rules of nomenclature. It follows that the type specimen for T. officinale is the type specimen for the genus. Therefore, POWO can't just ignore T. officinale; it has to call it something. So what it does is call T. officinale an exact synonym of Section Taraxacum. Therefore, in POWO's taxonomy, Section Taraxacum is a species that somehow has infrataxa which are also species. So POWO is basically doing the same thing as the proposed compromise, just describing it in a slightly different way (the compromise would call the infrataxa infahybrids instead).

I think we would then just keep Section Taraxacum as a monotypic Section. It is redundant because it is monotypic, but we have Sections for the rest of Taraxacum and the staff generally prefers we have everything in Sections or nothing, even if that means some are monotypic. Another advantage of not changing the definition of the Section is that the inat servers wouldn't have to needlessly re-index all 100,000 plus T. officinale observations to remove the Section from their family tree. Re-indexing the 300 or so observations ID'd to microspecies is far easier on the servers.

As mentioned several times above there is a completely separate issue with whether T. erythrospermum is a distinct taxon or not. We can't adjudicate that issue here, because it would require doing taxonomy on inat. If T. erythrospermum is synonymized with T. officinale in future work we can handle it then. If you want to discuss that issue I suggest making a flag on T. erythrospermum, discussing it in the comments of the journal post about it linked above, or starting a forum thread, but please try to keep that issue out of the current discussion for clarity.

Posted by wildskyflower 22 days ago

Thanks for the explanations! So where do you all think @wildskyflower's proposal would leave us in terms of appropriately ID'ing dandelion observations (especially in the United States)? Would we basically be in the same situation we are now, where we have insufficient data to go any further than genus-level on nearly all observations?

Posted by comradejon 22 days ago

@comradejon yeah it would be the same. Just you would be able to skip to species T. officinale if you were able to rule out all of the other sections (Erythrosperma/Hamata/Borea/etc.) instead of being stuck at section Taraxacum.

Posted by upupa-epops 22 days ago

So many good points and counterpoints here, without understanding them all fully I hesitate to pick a side. So the following is offered only as a thought experiment:

Suppose for the name "Taraxacum officinale" that we follow POWO to the letter (almost). How would that look, and what would be the practical consequences? That would mean that we:

(1.) create an empty species-rank taxon called "Section taraxacum". (Trying to call the species "Taraxacum section Taraxacum" as POWO does, at a rank that is expecting a binomial, could be problematic in iNat, or if successful could create confusion with iNat's actual section-rank taxon of the same name.)

(2.) make it's parent taxon the section-rank taxon Taraxacum section Taraxacum already present in the iNat taxonomy.

(3.) swap the existing species-rank taxon Taraxacum officinale into the empty species-rank taxon Section taraxacum, bringing with it its common names and scientific synonyms (to now include Taraxacum officinale as in POWO).

(4.) leave all the other microspecies of Taraxacum section Taraxacum right where they are in iNat, at species rank within the section-rank taxon.

The results I can foresee:

(5.) People can still identify their dandelion observations using "common dandelion," Taraxacum officinale, or whatever name they are already accustomed to using, and iNat will automatically assign them to the species Section taraxacum.

(6.) Anyone confident enough to identify one of the microspecies can still do so unhindered. Any disagreements with Section taraxacum would cause the community taxon to be Taraxacum section Taraxacum.

(7.) Since we'd be using a regular iNat taxon change process, CV should follow along and start recommending Section taraxacum wherever it previously would have recommended Taraxacum officinale.

Personally the biggest drawback I'm seeing is the potentially confusing species name Section taraxacum. But I think that is mitigated by having the familiar common names attached to it. If needed to further reduce confusion, common names could be modified to add a parenthetic (Taraxacum "officinale") for clarity.

OK, tell me what I'm missing here...

EDIT to add a "visual" representation of how the taxonomy would look in iNat:

genus Taraxacum
section Taraxacum
species Section taraxacum <== Taraxacum officinale, common dandelion, etc.
species Taraxacum microspecies belonging to the section...

Posted by jdmore 21 days ago

For what it's worth, I'm in favor of @wildskyflower's proposal - or at a minimum, I'm not opposed. Some of my thinking:

(1) Under POWO, T. officinale isn't a species (it's a synonym for Taraxacum sect. Taraxacum). We don't seem to have the collective stomach to (do what POWO says and) wipe out our taxon and bulk-transfer iNat's 157,000+ T. officinale observations to... you know, wherever (genus or section). Maybe (probably?) we should, but we don't. Which means absent a proposal like @wildskyflower's, iNat's taxonomic set-up stays undeniably broken/inappropriate - which I don't like.
(2) If Section Taraxacum/T. officinale is treated as uniquely in POWO as @wildskyflower represents ("exactly only one other Section in all of POWO's database"), then I don't think it's necessarily the end of the world if we deviate here (and for now).
(3) If we adopt @wildskyflower's proposal, it wouldn't be that difficult to push everything back "up" the taxonomic scale in the future, to match POWO, if we were so inclined. Of course, that raises the question of why we don't just do so now. But again, @wildskyflower's proposal is much better than our current, broken situation.
(4) Taraxacum taxonomy is obviously in flux right now. I like POWO, and I probably often like to split things. But really - POWO already acknowledges almost 2,500 species in Sec. Taraxacum alone. On iNat, we only have about 22,700 RG plant species in the United States. Where does this end - are 25% of all plant species going to be dandelions? Personally, I'm hopeful that as things progress, POWO winds up treating things more like what @wildskyflower suggests, across the whole genus. At its worst, @wildskyflower's proposal seems like a decent somewhat short-term band-aid, and that's good enough for me.

Posted by comradejon 21 days ago

I don´t have any major objection to the change proposed by @wildskyflower, or, at least I don´t think so. I gather that the result will be that any Taraxacum species should fall into either of two categories: Those belonging to sections other than sect. Taraxacum will (continue to) be “species”, and those of sect. Taraxacum will be at another (kind of lower?) taxonomic level, “infraspecies”. This distinction seems a bit odd to me as European, but it appears to have little or no practical consequences other than allowing T. officinale to merge with sect. Taraxacum while still preserving its rank as a “species” – if I understand it correctly.

Posted by snedergaard 21 days ago

@snedergaard - I understand the result the same way you do.

Posted by comradejon 21 days ago

@jdmore Species names in inat have to be proper binomials. I was just describing the weird quirk of how POWO has done the database entry there; part of the reason it has to do that is because the POWO database does not even have an existing rank of Section, whereas inat does, and partly because I assume they want to find a way to both respect the nomenclatural priority of the name T. officinale and keep the microspecies that works in their framework.

Posted by wildskyflower 21 days ago

I do not think I should have any "voting rights" here, but the proposal looks like a reasonable compromise that could actually work in practice.

Posted by vladimir_fuka 21 days ago

For what it's worth I reached out to Curtis Bjork to see if he had any suggestions for us and he said he had no idea. I'm pretty sure he would prefer to have the microspecies accepted as full species but he seems a bit cynical about iNaturalist in general including taxonomy discussions here. You can see his opinion on the microspecies here: https://www.inaturalist.org/observations/108199765

Posted by upupa-epops 21 days ago

Seems a crying shame that such an expert has 0 observations and 2 identifications after being a member since 2018.

Posted by jasonhernandez74 21 days ago

That is a very insightful comment. I think it is the most succinct summary I have seen of why the microspecies can be conceptually useful as tools.

Note that Curtis really has more like 50-60 IDs, he just posts them almost exclusively as comments instead of official IDs; he has ID'd the vast majority of sedgequeen's observations that are ID'd to microspecies, for example. I do wonder what his reservations about inat because I think it could be is a good example of where supporting both kinds of use cases can be useful to accomplishing scientific progress via. I suspect it is in part because the microspecies just can't usually be ID'd from photos (most of his comment IDs are on observations where someone has sent him a physical specimen).

Posted by wildskyflower 21 days ago

It sounds like he takes issue with the data quality standards, the involvement of AI, having to repeatedly argue with less experienced identifiers, and that the taxonomy is just out of date on the taxa he's interested in (he published a paper on Artemisia 3 years ago, and can't ID those species on iNat because our taxonomy hasn't caught up yet).

He has ID'd one dandelion from photos for me, I've asked about others a while ago but I think I just sent too many at once haha.

Posted by upupa-epops 20 days ago

@wildskyflower

Species names in inat have to be proper binomials.

If by proper binomial you mean a binomial that is effectively, validly, and legitimately published according to the rules of nomenclature, I agree 100%. I was just trying to think through what it would mean to not deviate from POWO, which in this case would mean using an invalid species name to "contain" Taraxacum officinale Auct., as POWO currently does.

Unfortunately, it would not be the first time iNaturalist used an invalid binomial because it was nevertheless accepted by POWO.

Posted by jdmore 20 days ago

@jdmore I mean literally I don't think the system would let us do that. Anyway we shouldn't even if it would, even if POWO accepts some invalid binomials and there are also a handful of examples on inat of binomials that are both blatantly invalid and not accepted by POWO. For subspecies, varieties, and forms the system definitely requires a valid trinomial in the sense that it is restricted to be of the form "parent binomial+' ssp/var/f '+another word". The advantage of infrahybrid for the microspecies is that because there is no standardized naming convention in the rules of nomenclature the system will allow something more freeform "parent genus+another word", so we can just use the microspecies binomial even though it has a parent species.

We don't have to do anything weird with the species name because as I said before the binomial Taraxacum officinale is undisputedly legitimate in a nomenclatural sense; even Curtis Bjork's paper Overlooked diversity in exotic Taraxacum in British Columbia, Canada admits the name and its usage is legitimate, even if he doesn't like/agree with it:

Although use of the name T. officinale, unlike T. erythrospermum, is legitimate in British Columbia and North America, it should be avoided

Which is consistent with the Kirschner & Štěpánek stance in the lectotypification paper I suggested using as the source for the proposed deviation, which is that they recommend the name is intended to be useful primarily for non-specialists.

Posted by wildskyflower 20 days ago

@wildskyflower well, as it turns out, my scenario would not work anyway, because the word "section" is automatically stripped out of taxon names by iNaturalist - it being the name of a rank.

What would work though (I tested it without committing anything) is doing a taxon change to swap Taraxacum officinale into Taraxacum sect. Taraxacum. That would have about the same effect as my original scenario. People could still use Taraxacum officinale to enter IDs, and iNat would interpret it as sect. Taraxacum. Any microspecies IDs would not create unwanted disagreements. People just wouldn't see their favorite macrospecies name displayed anymore.

As I think about it more, to me that scenario still seems preferable to co-opting an iNat rank intended for nothosubsp. and nothovar. taxa for the species-rank taxa of one section of Taraxacum, while leaving all the other Taraxacum species at species rank.

I also would not mind just leaving the status quo, and letting people use their favorite macrospecies or microspecies as circumstances warrant. If there is a disagreement between Taraxacum officinale and someone's microspecies ID (thus making the Community ID sect. Taraxacum), that's probably a good thing. It would take two additional agreements with the microspecies ID to override the Taraxacum officinale ID and the sect. Taraxacum community ID, which seems like a reasonable threshold in the circumstances.

While the debate continues, I have added a tiny bit of progress in the form of the deviation that @loarie requested a while back in the discussion, so that the current situation is at least mapped to POWO:
https://www.inaturalist.org/taxon_framework_relationships/753820

If the ultimate consensus goes in a different direction, then the deviation can easily be revised or removed.

Posted by jdmore 20 days ago

"iNaturalist is a fantastic tool that has vastly expanded the availability of biological data for research, conservation and education. It is not where scientific hypotheses are presented and adjudicated."

This to me is itself an argument for following POWO -- any other action that's taken is basically saying "iNaturalist's opinion on the science is that this is what is most valid", while simply following POWO means that iNat isn't being "opinionated" at all and is simply following POWO's taxonomy (as it usually does.)

That being said, I think the infrahybrid compromise is a good solution too, but I 100% understand the reasoning for wanting to stick with POWO. I don't have a strong preference either way.

Posted by cigazze 18 days ago

It would be very easy for iNat to influence taxonomy by leveraging its observers. I believe iNat is being extremely sensitive to the need for taxonomists and others to continue exploring, discovering, and describing. I see no reason there can't be two views of the same data. One view which is primarily morphological and groups what a taxonomist sees as multiple species into a single species that a less savvy citizen like me can understand. And another view which is more deeply scientific and presents a full panoply of described discovery using all science known to all scientists (and some citizens).

Species proliferation due to new technology like simple and cheap DNA sequencing, macro photography, etc should not mean that ordinary citizens lose their understanding of "species". Science on iNat should continue to be accessible to the most humble of citizens. This will mean either careful presentment of increasingly esoteric species distinctions -or- influencing taxonomy to further celebrate the discovery and description of new sub-species such that the species rank only proliferates due to evolution rather than new technology.

Posted by stockslager 16 days ago

i feel like the vastly higher proportion of people who use taxonomy should have influence over the people who create it. After all the taxonomy isn't just there to generate papers, it's there for everyone else to use. It's not about savviness, an expert on one genus is going to have to have a different view than an ecologist who looks at all taxa in an ecosystem. There's only so much space in our brains. The challenge is getting a taxonomy that works for both, and i know people of people don't agree with my views and i also know i'm not always the most tactful to say the least, but in short we need the whole spectrum of views on taxonomy, and letting any one group take over will cause problems. You all don't want me as the taxonomic dictator cuz i probably WOULD lump too much, but the balance is such now that there's no danger of that whereas the splitters are really very extreme in what they are doing. So basically I agree with all you're saying @stockslager except i don't think we need to be quite as sensitive to 'letting taxonomy rip' when it doesn't work for us.

Posted by charlie 16 days ago

"The taxonomy isn't just there to generate papers, it's there for everyone to use" -- isn't that an easy distinction for scientists in any branch to forget?

The Forum discussion on this topic mentioned "evolutionarily significant units." Well, from an ecological point of view, we can just as well think of "ecologically significant units," which may or may not correspond exactly to the species level. I think of the Pacific Chorus Frog, recently split into three species, and then even more recently lumped back into the original one species. In ecological terms, though, hasn't it always been a single ecologically significant unit, that is, filling the same ecological niche across its range? Would an assessment of a wetland's health change according to whether it was home to Pacific Chorus Frogs or Sierra Chorus Frogs?

Posted by jasonhernandez74 16 days ago

the assessment of a wetland's health gets difficult if things are changed frequently because splits can't be done on old data that was collected years ago.

Posted by charlie 16 days ago

"i feel like the vastly higher proportion of people who use taxonomy should have influence over the people who create it."

Agree with you Charlie. It's not like we have ill intent. We just want to be able to observably identify the things we are asked to preserve... species.

Posted by stockslager 15 days ago

Usually the taxonomy curation discussions I've been involved with on iNaturalist have been about the logistics of matching the established taxonomy onto iNaturalist's taxonomy system. This one is confusing to me because there is only really one established globally consistent taxonomy for Taraxacum, but most of the discussion has been about whether or not we agree with or like that one. Since POWO uses that system, deviating from POWO here also means deviating from established taxonomy in general as far as I can tell.

(other than POWO I'm aware of this site which I think covers all the sections, not sure about others: https://cichorieae.e-taxonomy.net/portal/cdm_dataportal/taxon/b86f1156-091c-494d-a9c9-c84d71058f98/synonymy)

Posted by upupa-epops 15 days ago

i think we have to ask ourselves whether microspecies that can't even be reliably differentiated with genetics much less with photos have any place on iNat, and if they do, what that place is. What is missing from the discussion is, what would the microspecies elevated to species level even be used for? Do we think it's possible for people to actually collect iNat observations that can be identified to species under such a regime? If not, why do it? I'm sorry but 'POWO did it' just isn't a compelling answer, even if it is useful for other applications. If POWO jumped off a cliff would you do it, etc...

Posted by charlie 15 days ago

Many of the microspecies can be identified visually and already have observations on iNat.

@charlie We follow a taxonomic authority to simplify things, have an easily understandable taxonomy, and to reduce arguments exactly like this.

Posted by raymie 15 days ago

and what exactly would be simplified by breaking all the existing Taraxacum officionale observations? We tried POWO, and not all of us think it's still going well. So it's certainly valid to discuss whether we should still do so

Posted by charlie 15 days ago

That's a broader discussion beyond the scope of this flag.

The problem with this atm is that dandelion observations are being fundamentally handled differently in Europe vs North America as along as this taxon exists in iNat. How the taxonomy is being handled right now in iNat, T. officinale is a species that only exists where it's introduced. That doesn't really make any sense.

Posted by raymie 15 days ago

I'm not sure dandelions make any sense anywhere.

:-)

Posted by sedgequeen 15 days ago

yeah, that really is true. what an odd group of plants.

Posted by charlie 15 days ago

After I poked Curtis about his dislike of iNaturalist, he gave me a rant about all his problems with POWO as well haha. But I'm not sure how it would improve things to abandon an imperfect system in favour of no system at all...

There are a decent number of sources and people out there who are identifying dandelions to microspecies (I have some sources collected here), they're just not very accessible outside of Europe because they only cover the species found in their respective countries.

Posted by upupa-epops 15 days ago

co-opting an iNat rank intended for nothosubsp. and nothovar. taxa for the species-rank taxa of one section of Taraxacum, while leaving all the other Taraxacum species at species rank.

@jdmore There isn't any official documentation I can find on what the rank is intended for. There are also so few infrahybrids that I don't know if we can really say there is a site-wide convention. As for the fact that section taraxacum would be treated differently than the rest of the genus, that would be true on some level anyway because POWO and the literature (e.g. the Curtis Bjork and Kirschner papers) also treat section taraxacum differently from the rest of the genus, to varying degrees. The difference is due to the precedence of T. officinale as a name, and the fact that the lectotype deliberately ambiguous as to microspecies. That is why POWO has it in this weird superposition state where it both accepts and rejects the name at the same time and why I think it may be justifiable to handle it in a niche way.

@upupa-epops 'Lumps' only make up about 0.8% of species-level or lower POWO deviations on inat, while splits make up about 44%, so it isn't necessarily surprising that you haven't encountered many discussions that involve a similar discussion. We as curators are just really averse to deviating from POWO in the direction of a lump. Even here, we aren't collectively willing to actually do a lump; inat's taxonomy would still have everything and be structurally and functionally identical to POWO's taxonomic hierarchy.

Another important thing to note here is that, on a technical level, any decision we would make here can at least theoretically be reversed later through curator actions. Any decision that causes a re-index of all T. officinale observations will cost inat as a site I would guess ballpark 10s of dollars worth of server-hours to re-index all of the observations but that is the main technical cost. The main non-technical costs to weigh are the practical impact to site users for ecology, ID purposes, human hours spent managing ID details and DQA flags, and whether T. officinale is removed from the CV.

I find it encouraging that the principle people who actually use the microspecies on inat, snedergaard and Curtis Bjork (most often indirectly through sedgequeen), have expressed support for or ambivalence towards the proposed infrahybrid compromise. It is also worth noting that the proposed source for the deviation, the one that says

Non-specialists can continue in using the name T. officinale in the generally and traditionally adopted way

is co-authored by Jan Kirschner and Jan Štěpánek, who are two of the largest proponents of microspecies taxonomy and who have published far more taraxacum species accepted by POWO than any other living person (there are 2,470 accepted Taraxacum species on POWO; Štěpánek is on 282 and Kirschner is on 274, with almost 100% overlap; the next highest for a living author is Hans Øllgaard who has published 80 accepted Taraxacum species on POWO)

Posted by wildskyflower 15 days ago

"How the taxonomy is being handled right now in iNat, T. officinale is a species that only exists where it's introduced."

That's not what I see on the observation map just now.

Posted by jasonhernandez74 15 days ago

@jasonhernandez74 There's also the problem that T. officinale was never even defined correctly by most iNat identifiers in the first place. This taxon really is pretty much an undefined taxon on iNat right now anyway. In my eyes, another reason to not keep it around.

Posted by raymie 15 days ago

@wildskyflower Since you bring it up, I can add that I had a discussion on the T. officinale subject some time ago with Hans Øllgaard. It appears that his view on the matter is in line with the conclusions made by Kirschner and Štěpánek on T. officinale in their 2011-paper. He believes that - for practical reasons - the name T. officinale is unsuitable among botanists, while admitting that its use as synonym for Sect. Taraxacum is valid - but it would then need to be clarified each time. In my opinion, the last part illustrates the problem very nicely, and it will likely persist no matter what is done on iNat. I still support your proposal, though, as I see it as a positive step towards "talking the same language".

Posted by snedergaard 14 days ago

@loarie do you have an opinion on whether or how to deviate from POWO here, given the number of observations affected and the significance of this taxon?

The current proposal under discussion is to keep T. officinale as a species (instead of merging it into section Taraxacum), and make all the other species in section Taraxacum into infrahybrids below T. officinale. Other Taraxacum sections would remain as they are.

Posted by upupa-epops 13 days ago

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